miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24528 3' -55.2 NC_005264.1 + 1958 0.68 0.859468
Target:  5'- uUGCCCCCcC-CCCCGAGCucccauauGCAc -3'
miRNA:   3'- uGCGGGGGuGuGGGGCUUGuuu-----UGUu -5'
24528 3' -55.2 NC_005264.1 + 2666 0.69 0.781884
Target:  5'- -aGUCCUCugGCCCCGAccGCGAGgGCAGc -3'
miRNA:   3'- ugCGGGGGugUGGGGCU--UGUUU-UGUU- -5'
24528 3' -55.2 NC_005264.1 + 3436 0.67 0.895571
Target:  5'- cGCGCCCgCGCugCUC--GCAAAGCGc -3'
miRNA:   3'- -UGCGGGgGUGugGGGcuUGUUUUGUu -5'
24528 3' -55.2 NC_005264.1 + 4160 0.66 0.925807
Target:  5'- uUGCCgCCCACGCCgCGGugugGgGAAGCGGa -3'
miRNA:   3'- uGCGG-GGGUGUGGgGCU----UgUUUUGUU- -5'
24528 3' -55.2 NC_005264.1 + 7903 0.72 0.652035
Target:  5'- gACGuCCCCCACGCUCUGGcuaGCAAcGCGc -3'
miRNA:   3'- -UGC-GGGGGUGUGGGGCU---UGUUuUGUu -5'
24528 3' -55.2 NC_005264.1 + 9204 1.05 0.005417
Target:  5'- cACGCCCCCACACCCCGAACAAAACAAu -3'
miRNA:   3'- -UGCGGGGGUGUGGGGCUUGUUUUGUU- -5'
24528 3' -55.2 NC_005264.1 + 9554 0.68 0.82677
Target:  5'- cGCGUCgCCCGCGCCUCGcuACAGAAg-- -3'
miRNA:   3'- -UGCGG-GGGUGUGGGGCu-UGUUUUguu -5'
24528 3' -55.2 NC_005264.1 + 11466 0.67 0.888804
Target:  5'- -aGCCCCgaaGCACCCCc--CGAAGCAc -3'
miRNA:   3'- ugCGGGGg--UGUGGGGcuuGUUUUGUu -5'
24528 3' -55.2 NC_005264.1 + 28755 0.66 0.914441
Target:  5'- uACGUCUCC-CAgCCUGAcaGCAGGACAu -3'
miRNA:   3'- -UGCGGGGGuGUgGGGCU--UGUUUUGUu -5'
24528 3' -55.2 NC_005264.1 + 28916 0.66 0.933181
Target:  5'- cACGCCCCCAauauuauccuccuccCACCCCcAAaaaAAAACc- -3'
miRNA:   3'- -UGCGGGGGU---------------GUGGGGcUUg--UUUUGuu -5'
24528 3' -55.2 NC_005264.1 + 30079 0.75 0.47995
Target:  5'- gGCGCCgCCGCGCCC-GGACAGAaucGCGAg -3'
miRNA:   3'- -UGCGGgGGUGUGGGgCUUGUUU---UGUU- -5'
24528 3' -55.2 NC_005264.1 + 35477 0.66 0.925807
Target:  5'- uCGCCCCCucaaACCCUaggGGACGAcGGCGAc -3'
miRNA:   3'- uGCGGGGGug--UGGGG---CUUGUU-UUGUU- -5'
24528 3' -55.2 NC_005264.1 + 35522 0.68 0.835236
Target:  5'- gUGCCCCCGuCGCCCaCGGGCGc----- -3'
miRNA:   3'- uGCGGGGGU-GUGGG-GCUUGUuuuguu -5'
24528 3' -55.2 NC_005264.1 + 38375 0.67 0.895571
Target:  5'- cCGCUUCCGCACCUCGcucucgaAAGACAAg -3'
miRNA:   3'- uGCGGGGGUGUGGGGCuug----UUUUGUU- -5'
24528 3' -55.2 NC_005264.1 + 38417 0.68 0.835236
Target:  5'- uACGCCCUgCugGCCCCuGGCA-AGCAAu -3'
miRNA:   3'- -UGCGGGG-GugUGGGGcUUGUuUUGUU- -5'
24528 3' -55.2 NC_005264.1 + 38717 0.67 0.879663
Target:  5'- uCGCCCCCAgGcguagaggaccccuCCCCGGACGGGcuggccgccuuGCGAc -3'
miRNA:   3'- uGCGGGGGUgU--------------GGGGCUUGUUU-----------UGUU- -5'
24528 3' -55.2 NC_005264.1 + 40056 0.67 0.902101
Target:  5'- -gGCCCgCAgCGCCCCGGcgGCAAGAgGc -3'
miRNA:   3'- ugCGGGgGU-GUGGGGCU--UGUUUUgUu -5'
24528 3' -55.2 NC_005264.1 + 40357 0.66 0.930603
Target:  5'- uCGCCCCCGagACCCucguggcgcuuugCGAGCAGcGCGGg -3'
miRNA:   3'- uGCGGGGGUg-UGGG-------------GCUUGUUuUGUU- -5'
24528 3' -55.2 NC_005264.1 + 40445 0.73 0.600249
Target:  5'- -aGCCCUCGcCGCCCCcagacgGAGCGGAGCGAa -3'
miRNA:   3'- ugCGGGGGU-GUGGGG------CUUGUUUUGUU- -5'
24528 3' -55.2 NC_005264.1 + 40934 0.69 0.791173
Target:  5'- cCGCCgCgCCGCGCCCCGGuCGAucGCAGc -3'
miRNA:   3'- uGCGG-G-GGUGUGGGGCUuGUUu-UGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.