miRNA display CGI


Results 1 - 20 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24528 3' -55.2 NC_005264.1 + 128231 1.05 0.005417
Target:  5'- cACGCCCCCACACCCCGAACAAAACAAu -3'
miRNA:   3'- -UGCGGGGGUGUGGGGCUUGUUUUGUU- -5'
24528 3' -55.2 NC_005264.1 + 9204 1.05 0.005417
Target:  5'- cACGCCCCCACACCCCGAACAAAACAAu -3'
miRNA:   3'- -UGCGGGGGUGUGGGGCUUGUUUUGUU- -5'
24528 3' -55.2 NC_005264.1 + 88294 0.78 0.318027
Target:  5'- gGCGCCCCCACua-CCGAaaGCAGGGCAGa -3'
miRNA:   3'- -UGCGGGGGUGuggGGCU--UGUUUUGUU- -5'
24528 3' -55.2 NC_005264.1 + 97391 0.78 0.332995
Target:  5'- -aGCCCCCAgGgCCCGAGCGAuGCGAc -3'
miRNA:   3'- ugCGGGGGUgUgGGGCUUGUUuUGUU- -5'
24528 3' -55.2 NC_005264.1 + 30079 0.75 0.47995
Target:  5'- gGCGCCgCCGCGCCC-GGACAGAaucGCGAg -3'
miRNA:   3'- -UGCGGgGGUGUGGGgCUUGUUU---UGUU- -5'
24528 3' -55.2 NC_005264.1 + 143581 0.73 0.569403
Target:  5'- cCGUCCCCGgGgCCCGGAgGGAACGAg -3'
miRNA:   3'- uGCGGGGGUgUgGGGCUUgUUUUGUU- -5'
24528 3' -55.2 NC_005264.1 + 129921 0.73 0.589933
Target:  5'- gGCGCCCCCGCgACCCCuGcGCGAu-CGAg -3'
miRNA:   3'- -UGCGGGGGUG-UGGGG-CuUGUUuuGUU- -5'
24528 3' -55.2 NC_005264.1 + 40445 0.73 0.600249
Target:  5'- -aGCCCUCGcCGCCCCcagacgGAGCGGAGCGAa -3'
miRNA:   3'- ugCGGGGGU-GUGGGG------CUUGUUUUGUU- -5'
24528 3' -55.2 NC_005264.1 + 159472 0.73 0.600249
Target:  5'- -aGCCCUCGcCGCCCCcagacgGAGCGGAGCGAa -3'
miRNA:   3'- ugCGGGGGU-GUGGGG------CUUGUUUUGUU- -5'
24528 3' -55.2 NC_005264.1 + 83815 0.72 0.610589
Target:  5'- uCGCCUCCACGCCgcauuuuaucggCCGAGCAAccucGGCAGg -3'
miRNA:   3'- uGCGGGGGUGUGG------------GGCUUGUU----UUGUU- -5'
24528 3' -55.2 NC_005264.1 + 84071 0.72 0.620946
Target:  5'- cCGCCCCCugGCUCau-GCGGAGCAGc -3'
miRNA:   3'- uGCGGGGGugUGGGgcuUGUUUUGUU- -5'
24528 3' -55.2 NC_005264.1 + 7903 0.72 0.652035
Target:  5'- gACGuCCCCCACGCUCUGGcuaGCAAcGCGc -3'
miRNA:   3'- -UGC-GGGGGUGUGGGGCU---UGUUuUGUu -5'
24528 3' -55.2 NC_005264.1 + 46422 0.71 0.703404
Target:  5'- gACGCCCCCAgcgacCugCCgCGGGCucAGCGAg -3'
miRNA:   3'- -UGCGGGGGU-----GugGG-GCUUGuuUUGUU- -5'
24528 3' -55.2 NC_005264.1 + 144309 0.71 0.71353
Target:  5'- cGCGCCCUCagggggagacgGCGcCCCCGAucgGCAAGGCGu -3'
miRNA:   3'- -UGCGGGGG-----------UGU-GGGGCU---UGUUUUGUu -5'
24528 3' -55.2 NC_005264.1 + 86439 0.7 0.723585
Target:  5'- gGCGCCCuaugugCCACGCCCuCGAGgcGAACAc -3'
miRNA:   3'- -UGCGGG------GGUGUGGG-GCUUguUUUGUu -5'
24528 3' -55.2 NC_005264.1 + 80429 0.7 0.73356
Target:  5'- cUGCCCCCGCcagcuCUCCGGGCAuccAAACGu -3'
miRNA:   3'- uGCGGGGGUGu----GGGGCUUGU---UUUGUu -5'
24528 3' -55.2 NC_005264.1 + 101754 0.7 0.734552
Target:  5'- cGCGCuCCCCAaaggacgugguggcgGCCCUGAACGGAGCc- -3'
miRNA:   3'- -UGCG-GGGGUg--------------UGGGGCUUGUUUUGuu -5'
24528 3' -55.2 NC_005264.1 + 161834 0.69 0.772457
Target:  5'- cUGCCCCCcCACCacaCGGgcGCGGGGCAAg -3'
miRNA:   3'- uGCGGGGGuGUGGg--GCU--UGUUUUGUU- -5'
24528 3' -55.2 NC_005264.1 + 64797 0.69 0.772457
Target:  5'- aGCGCCCCCAUggGCaCCgGAagcGCAGGGCu- -3'
miRNA:   3'- -UGCGGGGGUG--UG-GGgCU---UGUUUUGuu -5'
24528 3' -55.2 NC_005264.1 + 54241 0.69 0.77907
Target:  5'- gGCGgCCCCGCGCgCCaacgugucgaguggGAGCGGGGCGAg -3'
miRNA:   3'- -UGCgGGGGUGUGgGG--------------CUUGUUUUGUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.