miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24528 3' -55.2 NC_005264.1 + 140606 0.68 0.843513
Target:  5'- gGCGaCCgCCCAgACCgCCG-ACGAGGCGAc -3'
miRNA:   3'- -UGC-GG-GGGUgUGG-GGCuUGUUUUGUU- -5'
24528 3' -55.2 NC_005264.1 + 66210 0.69 0.809302
Target:  5'- uGCGCCUCCGCGgCCagcgaaGGACuuGGCGAg -3'
miRNA:   3'- -UGCGGGGGUGUgGGg-----CUUGuuUUGUU- -5'
24528 3' -55.2 NC_005264.1 + 95216 0.69 0.809302
Target:  5'- gACaCCCCUGCGCCCgcguggCGAACAAAACc- -3'
miRNA:   3'- -UGcGGGGGUGUGGG------GCUUGUUUUGuu -5'
24528 3' -55.2 NC_005264.1 + 54687 0.69 0.817248
Target:  5'- uACGCuCCCCGCGaggcucgacggccCCCCGAucccgGCGGAAUAc -3'
miRNA:   3'- -UGCG-GGGGUGU-------------GGGGCU-----UGUUUUGUu -5'
24528 3' -55.2 NC_005264.1 + 43716 0.69 0.818122
Target:  5'- uGCGUCCUCGCccuCCCCcAGCAGAGCc- -3'
miRNA:   3'- -UGCGGGGGUGu--GGGGcUUGUUUUGuu -5'
24528 3' -55.2 NC_005264.1 + 128581 0.68 0.82677
Target:  5'- cGCGUCgCCCGCGCCUCGcuACAGAAg-- -3'
miRNA:   3'- -UGCGG-GGGUGUGGGGCu-UGUUUUguu -5'
24528 3' -55.2 NC_005264.1 + 157444 0.68 0.835236
Target:  5'- uACGCCCUgCugGCCCCuGGCA-AGCAAu -3'
miRNA:   3'- -UGCGGGG-GugUGGGGcUUGUuUUGUU- -5'
24528 3' -55.2 NC_005264.1 + 82966 0.68 0.835236
Target:  5'- uCGCCgCCGCGCCCCcguGACGAAGg-- -3'
miRNA:   3'- uGCGGgGGUGUGGGGc--UUGUUUUguu -5'
24528 3' -55.2 NC_005264.1 + 154549 0.68 0.835236
Target:  5'- gUGCCCCCGuCGCCCaCGGGCGc----- -3'
miRNA:   3'- uGCGGGGGU-GUGGG-GCUUGUuuuguu -5'
24528 3' -55.2 NC_005264.1 + 159961 0.69 0.791173
Target:  5'- cCGCCgCgCCGCGCCCCGGuCGAucGCAGc -3'
miRNA:   3'- uGCGG-G-GGUGUGGGGCUuGUUu-UGUU- -5'
24528 3' -55.2 NC_005264.1 + 121693 0.69 0.781884
Target:  5'- -aGUCCUCugGCCCCGAccGCGAGgGCAGc -3'
miRNA:   3'- ugCGGGGGugUGGGGCU--UGUUU-UGUU- -5'
24528 3' -55.2 NC_005264.1 + 64797 0.69 0.772457
Target:  5'- aGCGCCCCCAUggGCaCCgGAagcGCAGGGCu- -3'
miRNA:   3'- -UGCGGGGGUG--UG-GGgCU---UGUUUUGuu -5'
24528 3' -55.2 NC_005264.1 + 88294 0.78 0.318027
Target:  5'- gGCGCCCCCACua-CCGAaaGCAGGGCAGa -3'
miRNA:   3'- -UGCGGGGGUGuggGGCU--UGUUUUGUU- -5'
24528 3' -55.2 NC_005264.1 + 97391 0.78 0.332995
Target:  5'- -aGCCCCCAgGgCCCGAGCGAuGCGAc -3'
miRNA:   3'- ugCGGGGGUgUgGGGCUUGUUuUGUU- -5'
24528 3' -55.2 NC_005264.1 + 30079 0.75 0.47995
Target:  5'- gGCGCCgCCGCGCCC-GGACAGAaucGCGAg -3'
miRNA:   3'- -UGCGGgGGUGUGGGgCUUGUUU---UGUU- -5'
24528 3' -55.2 NC_005264.1 + 143581 0.73 0.569403
Target:  5'- cCGUCCCCGgGgCCCGGAgGGAACGAg -3'
miRNA:   3'- uGCGGGGGUgUgGGGCUUgUUUUGUU- -5'
24528 3' -55.2 NC_005264.1 + 159472 0.73 0.600249
Target:  5'- -aGCCCUCGcCGCCCCcagacgGAGCGGAGCGAa -3'
miRNA:   3'- ugCGGGGGU-GUGGGG------CUUGUUUUGUU- -5'
24528 3' -55.2 NC_005264.1 + 83815 0.72 0.610589
Target:  5'- uCGCCUCCACGCCgcauuuuaucggCCGAGCAAccucGGCAGg -3'
miRNA:   3'- uGCGGGGGUGUGG------------GGCUUGUU----UUGUU- -5'
24528 3' -55.2 NC_005264.1 + 7903 0.72 0.652035
Target:  5'- gACGuCCCCCACGCUCUGGcuaGCAAcGCGc -3'
miRNA:   3'- -UGC-GGGGGUGUGGGGCU---UGUUuUGUu -5'
24528 3' -55.2 NC_005264.1 + 80429 0.7 0.73356
Target:  5'- cUGCCCCCGCcagcuCUCCGGGCAuccAAACGu -3'
miRNA:   3'- uGCGGGGGUGu----GGGGCUUGU---UUUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.