miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24529 3' -54.9 NC_005264.1 + 131590 0.66 0.954128
Target:  5'- cGCCuagguguggagggagCGGCGCGCGUGggcgcGCGCGGAg- -3'
miRNA:   3'- -UGGuga------------GCUGCGCGUAC-----UGUGCCUac -5'
24529 3' -54.9 NC_005264.1 + 91525 0.66 0.951317
Target:  5'- cGCgCACUCGccaaguucaugcuCGCGCAUaucgGGCGCGGcgGg -3'
miRNA:   3'- -UG-GUGAGCu------------GCGCGUA----CUGUGCCuaC- -5'
24529 3' -54.9 NC_005264.1 + 117275 0.66 0.948817
Target:  5'- --gACUCGuGCGCGCc-GACACGGGc- -3'
miRNA:   3'- uggUGAGC-UGCGCGuaCUGUGCCUac -5'
24529 3' -54.9 NC_005264.1 + 40367 0.66 0.944465
Target:  5'- gACC-CUCGugGCGCuuUGcgagcaGCGCGGGc- -3'
miRNA:   3'- -UGGuGAGCugCGCGu-AC------UGUGCCUac -5'
24529 3' -54.9 NC_005264.1 + 6736 0.66 0.944465
Target:  5'- -gUACUCcGCG-GCGUGGCGCGGGa- -3'
miRNA:   3'- ugGUGAGcUGCgCGUACUGUGCCUac -5'
24529 3' -54.9 NC_005264.1 + 159394 0.66 0.944465
Target:  5'- gACC-CUCGugGCGCuuUGcgagcaGCGCGGGc- -3'
miRNA:   3'- -UGGuGAGCugCGCGu-AC------UGUGCCUac -5'
24529 3' -54.9 NC_005264.1 + 17141 0.66 0.944465
Target:  5'- --gGCUUgGGCGCGCAUGGguCGGAc- -3'
miRNA:   3'- uggUGAG-CUGCGCGUACUguGCCUac -5'
24529 3' -54.9 NC_005264.1 + 129335 0.66 0.939878
Target:  5'- uACCggGCgcagCGACGCGCAcUGagcaaGCGCGGAa- -3'
miRNA:   3'- -UGG--UGa---GCUGCGCGU-AC-----UGUGCCUac -5'
24529 3' -54.9 NC_005264.1 + 10308 0.66 0.939878
Target:  5'- uACCggGCgcagCGACGCGCAcUGagcaaGCGCGGAa- -3'
miRNA:   3'- -UGG--UGa---GCUGCGCGU-AC-----UGUGCCUac -5'
24529 3' -54.9 NC_005264.1 + 118559 0.66 0.935054
Target:  5'- cCCGCUCGgugaucucauccGCGCgGCGUGACGCGccGAa- -3'
miRNA:   3'- uGGUGAGC------------UGCG-CGUACUGUGC--CUac -5'
24529 3' -54.9 NC_005264.1 + 84796 0.66 0.935054
Target:  5'- gUCAUUCGAgGCaggGCAUGgcGCACGGAg- -3'
miRNA:   3'- uGGUGAGCUgCG---CGUAC--UGUGCCUac -5'
24529 3' -54.9 NC_005264.1 + 8062 0.67 0.924689
Target:  5'- cCCACgucgCGGC-CGCAgucgGGCACGGGc- -3'
miRNA:   3'- uGGUGa---GCUGcGCGUa---CUGUGCCUac -5'
24529 3' -54.9 NC_005264.1 + 69810 0.67 0.924689
Target:  5'- cACgCAUUCGGCGCGgAcGACGCcgccgGGGUGa -3'
miRNA:   3'- -UG-GUGAGCUGCGCgUaCUGUG-----CCUAC- -5'
24529 3' -54.9 NC_005264.1 + 127089 0.67 0.924689
Target:  5'- cCCACgucgCGGC-CGCAgucgGGCACGGGc- -3'
miRNA:   3'- uGGUGa---GCUGcGCGUa---CUGUGCCUac -5'
24529 3' -54.9 NC_005264.1 + 52655 0.67 0.924689
Target:  5'- gGCCgaugACUCGGCGgGgAagGGCACGGAg- -3'
miRNA:   3'- -UGG----UGAGCUGCgCgUa-CUGUGCCUac -5'
24529 3' -54.9 NC_005264.1 + 13955 0.67 0.919147
Target:  5'- uGCCACgcggCGACGaggagacgaGCGaGACGCGGGg- -3'
miRNA:   3'- -UGGUGa---GCUGCg--------CGUaCUGUGCCUac -5'
24529 3' -54.9 NC_005264.1 + 77014 0.67 0.913366
Target:  5'- cCCACgugagUGACGCGCGUGuCGCuaacgcuaggaaGGGUGc -3'
miRNA:   3'- uGGUGa----GCUGCGCGUACuGUG------------CCUAC- -5'
24529 3' -54.9 NC_005264.1 + 140639 0.67 0.901095
Target:  5'- uCCACUUGcCGCGCAcGcCACaGAUGg -3'
miRNA:   3'- uGGUGAGCuGCGCGUaCuGUGcCUAC- -5'
24529 3' -54.9 NC_005264.1 + 84758 0.67 0.901095
Target:  5'- uGCCGCaaCGACGgGCA--GCGCGGAg- -3'
miRNA:   3'- -UGGUGa-GCUGCgCGUacUGUGCCUac -5'
24529 3' -54.9 NC_005264.1 + 149408 0.68 0.894609
Target:  5'- uCCGCUCG-CGCGUA-GACugGGccuuUGg -3'
miRNA:   3'- uGGUGAGCuGCGCGUaCUGugCCu---AC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.