miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24538 3' -64.6 NC_005264.1 + 123360 1.1 0.000375
Target:  5'- gCAGGCCUGCCCCUGGCGGCUGAGCGCg -3'
miRNA:   3'- -GUCCGGACGGGGACCGCCGACUCGCG- -5'
24538 3' -64.6 NC_005264.1 + 4333 1.1 0.000375
Target:  5'- gCAGGCCUGCCCCUGGCGGCUGAGCGCg -3'
miRNA:   3'- -GUCCGGACGGGGACCGCCGACUCGCG- -5'
24538 3' -64.6 NC_005264.1 + 88194 0.74 0.159676
Target:  5'- -cGGCCUGCaCCCUGGguuCGcGCUGAcgguaGCGCg -3'
miRNA:   3'- guCCGGACG-GGGACC---GC-CGACU-----CGCG- -5'
24538 3' -64.6 NC_005264.1 + 122508 0.71 0.27986
Target:  5'- uGGGCUUGCCgCCgcacGCGGCgGGGgGCa -3'
miRNA:   3'- gUCCGGACGG-GGac--CGCCGaCUCgCG- -5'
24538 3' -64.6 NC_005264.1 + 3481 0.71 0.27986
Target:  5'- uGGGCUUGCCgCCgcacGCGGCgGGGgGCa -3'
miRNA:   3'- gUCCGGACGG-GGac--CGCCGaCUCgCG- -5'
24538 3' -64.6 NC_005264.1 + 72750 0.7 0.292596
Target:  5'- gCGGGCCUGUCCgCUGGgaucUGGUUucuGGCGCa -3'
miRNA:   3'- -GUCCGGACGGG-GACC----GCCGAc--UCGCG- -5'
24538 3' -64.6 NC_005264.1 + 151847 0.7 0.299132
Target:  5'- gGGGCCgccGCUCC-GGCGGCgacacgugggGGGCGUc -3'
miRNA:   3'- gUCCGGa--CGGGGaCCGCCGa---------CUCGCG- -5'
24538 3' -64.6 NC_005264.1 + 54227 0.7 0.312541
Target:  5'- gAGGCCUGUgUCgaGGCGGCcccGCGCg -3'
miRNA:   3'- gUCCGGACGgGGa-CCGCCGacuCGCG- -5'
24538 3' -64.6 NC_005264.1 + 14438 0.69 0.3335
Target:  5'- -cGGCCUGCCCUccccaauaggcaUGGCGGCaagccucucGCGUg -3'
miRNA:   3'- guCCGGACGGGG------------ACCGCCGacu------CGCG- -5'
24538 3' -64.6 NC_005264.1 + 81881 0.69 0.340712
Target:  5'- -uGGUCgaugGCgCCUUGGCGGCgaUGGGCGg -3'
miRNA:   3'- guCCGGa---CG-GGGACCGCCG--ACUCGCg -5'
24538 3' -64.6 NC_005264.1 + 118165 0.69 0.348036
Target:  5'- -uGGCC-GCCCauguCUGGCGGCUcGucgaacuuGGCGCa -3'
miRNA:   3'- guCCGGaCGGG----GACCGCCGA-C--------UCGCG- -5'
24538 3' -64.6 NC_005264.1 + 12258 0.69 0.355472
Target:  5'- aCGGGCCgucccugagaUGacgaugccguaCCCUGGCGGCaGGGCGg -3'
miRNA:   3'- -GUCCGG----------ACg----------GGGACCGCCGaCUCGCg -5'
24538 3' -64.6 NC_005264.1 + 4591 0.69 0.355472
Target:  5'- gCAGGCCcuCCCCgccagcgccgcGGCGGCguaGGCGCg -3'
miRNA:   3'- -GUCCGGacGGGGa----------CCGCCGac-UCGCG- -5'
24538 3' -64.6 NC_005264.1 + 123618 0.69 0.355472
Target:  5'- gCAGGCCcuCCCCgccagcgccgcGGCGGCguaGGCGCg -3'
miRNA:   3'- -GUCCGGacGGGGa----------CCGCCGac-UCGCG- -5'
24538 3' -64.6 NC_005264.1 + 61441 0.69 0.362259
Target:  5'- -cGGCCcGCUCCUcGGCGccgaguuGCUcGAGCGCc -3'
miRNA:   3'- guCCGGaCGGGGA-CCGC-------CGA-CUCGCG- -5'
24538 3' -64.6 NC_005264.1 + 156420 0.68 0.378443
Target:  5'- uCAGuGCCUGCggCUGGCGGCggUGAuCGCc -3'
miRNA:   3'- -GUC-CGGACGggGACCGCCG--ACUcGCG- -5'
24538 3' -64.6 NC_005264.1 + 67029 0.68 0.385526
Target:  5'- -cGGCCUugcgcagGCCCCcgacguaaGGCGGCgGAaGCGCc -3'
miRNA:   3'- guCCGGA-------CGGGGa-------CCGCCGaCU-CGCG- -5'
24538 3' -64.6 NC_005264.1 + 57471 0.68 0.385526
Target:  5'- --cGCCUGUuuUCCUGGCGGCgGcggcgaagaugcuGGCGCg -3'
miRNA:   3'- gucCGGACG--GGGACCGCCGaC-------------UCGCG- -5'
24538 3' -64.6 NC_005264.1 + 157362 0.68 0.386318
Target:  5'- gCGGGCCcugGCCgUgaugcugGGCGGCgGGGCGg -3'
miRNA:   3'- -GUCCGGa--CGGgGa------CCGCCGaCUCGCg -5'
24538 3' -64.6 NC_005264.1 + 39799 0.68 0.386318
Target:  5'- -cGGCCcgccaaGCCCCUGGUGGgCgagGAG-GCa -3'
miRNA:   3'- guCCGGa-----CGGGGACCGCC-Ga--CUCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.