miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24538 3' -64.6 NC_005264.1 + 3481 0.71 0.27986
Target:  5'- uGGGCUUGCCgCCgcacGCGGCgGGGgGCa -3'
miRNA:   3'- gUCCGGACGG-GGac--CGCCGaCUCgCG- -5'
24538 3' -64.6 NC_005264.1 + 4333 1.1 0.000375
Target:  5'- gCAGGCCUGCCCCUGGCGGCUGAGCGCg -3'
miRNA:   3'- -GUCCGGACGGGGACCGCCGACUCGCG- -5'
24538 3' -64.6 NC_005264.1 + 4591 0.69 0.355472
Target:  5'- gCAGGCCcuCCCCgccagcgccgcGGCGGCguaGGCGCg -3'
miRNA:   3'- -GUCCGGacGGGGa----------CCGCCGac-UCGCG- -5'
24538 3' -64.6 NC_005264.1 + 9892 0.68 0.418879
Target:  5'- -cGGCCUucccagCCCUGGCGGCaGAaaggcgGCGCu -3'
miRNA:   3'- guCCGGAcg----GGGACCGCCGaCU------CGCG- -5'
24538 3' -64.6 NC_005264.1 + 10885 0.66 0.529331
Target:  5'- gGGGCCguggggaauucccggUGCCCggucaUUGGuCGGCUGgauGGCGUg -3'
miRNA:   3'- gUCCGG---------------ACGGG-----GACC-GCCGAC---UCGCG- -5'
24538 3' -64.6 NC_005264.1 + 12258 0.69 0.355472
Target:  5'- aCGGGCCgucccugagaUGacgaugccguaCCCUGGCGGCaGGGCGg -3'
miRNA:   3'- -GUCCGG----------ACg----------GGGACCGCCGaCUCGCg -5'
24538 3' -64.6 NC_005264.1 + 14438 0.69 0.3335
Target:  5'- -cGGCCUGCCCUccccaauaggcaUGGCGGCaagccucucGCGUg -3'
miRNA:   3'- guCCGGACGGGG------------ACCGCCGacu------CGCG- -5'
24538 3' -64.6 NC_005264.1 + 19203 0.66 0.525582
Target:  5'- -cGGCUUGCCCaUGGUGuGCaggGAGCa- -3'
miRNA:   3'- guCCGGACGGGgACCGC-CGa--CUCGcg -5'
24538 3' -64.6 NC_005264.1 + 23653 0.66 0.497801
Target:  5'- aCAGGaCCgGCa--UGGCGGUaUGGGCGCc -3'
miRNA:   3'- -GUCC-GGaCGgggACCGCCG-ACUCGCG- -5'
24538 3' -64.6 NC_005264.1 + 29456 0.67 0.47606
Target:  5'- -cGGUCgGCCCCacgcggauuggggGGCGGUgcAGCGCa -3'
miRNA:   3'- guCCGGaCGGGGa------------CCGCCGacUCGCG- -5'
24538 3' -64.6 NC_005264.1 + 34120 0.67 0.435772
Target:  5'- -uGGCCuucgcUGCCUCUGGUGaC-GGGCGCg -3'
miRNA:   3'- guCCGG-----ACGGGGACCGCcGaCUCGCG- -5'
24538 3' -64.6 NC_005264.1 + 38335 0.68 0.386318
Target:  5'- gCGGGCCcugGCCgUgaugcugGGCGGCgGGGCGg -3'
miRNA:   3'- -GUCCGGa--CGGgGa------CCGCCGaCUCGCg -5'
24538 3' -64.6 NC_005264.1 + 39144 0.66 0.538747
Target:  5'- -cGGCCUGCUgugagccaccgacguCCgaauuauUGGCUGGGCGCg -3'
miRNA:   3'- guCCGGACGG---------------GGacc----GCCGACUCGCG- -5'
24538 3' -64.6 NC_005264.1 + 39799 0.68 0.386318
Target:  5'- -cGGCCcgccaaGCCCCUGGUGGgCgagGAG-GCa -3'
miRNA:   3'- guCCGGa-----CGGGGACCGCC-Ga--CUCgCG- -5'
24538 3' -64.6 NC_005264.1 + 40054 0.66 0.506992
Target:  5'- aGGGCCcgcagcGCCCC-GGCGGCaaGAG-GCc -3'
miRNA:   3'- gUCCGGa-----CGGGGaCCGCCGa-CUCgCG- -5'
24538 3' -64.6 NC_005264.1 + 46598 0.67 0.469807
Target:  5'- gAGGCuCUGUCCCUGcGgGGCgagGAcggcuccGUGCa -3'
miRNA:   3'- gUCCG-GACGGGGAC-CgCCGa--CU-------CGCG- -5'
24538 3' -64.6 NC_005264.1 + 54227 0.7 0.312541
Target:  5'- gAGGCCUGUgUCgaGGCGGCcccGCGCg -3'
miRNA:   3'- gUCCGGACGgGGa-CCGCCGacuCGCG- -5'
24538 3' -64.6 NC_005264.1 + 57471 0.68 0.385526
Target:  5'- --cGCCUGUuuUCCUGGCGGCgGcggcgaagaugcuGGCGCg -3'
miRNA:   3'- gucCGGACG--GGGACCGCCGaC-------------UCGCG- -5'
24538 3' -64.6 NC_005264.1 + 57898 0.67 0.479651
Target:  5'- gAGGCUcgGCgCUUGGCacGGCUGGGgGUu -3'
miRNA:   3'- gUCCGGa-CGgGGACCG--CCGACUCgCG- -5'
24538 3' -64.6 NC_005264.1 + 58258 0.68 0.40239
Target:  5'- -cGGCCcGaUCCCgugGGCGGCauGGCGCu -3'
miRNA:   3'- guCCGGaC-GGGGa--CCGCCGacUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.