miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24546 3' -53.8 NC_005264.1 + 78016 0.67 0.955067
Target:  5'- gCGUGCAUGACggcgaggcuucgcuCCGUGCGccaugcCCUG-CCu -3'
miRNA:   3'- -GCACGUAUUG--------------GGCGCGCuu----GGACaGG- -5'
24546 3' -53.8 NC_005264.1 + 98460 0.67 0.952292
Target:  5'- --cGCu--GCCCaGCGCGAACaC-GUCCa -3'
miRNA:   3'- gcaCGuauUGGG-CGCGCUUG-GaCAGG- -5'
24546 3' -53.8 NC_005264.1 + 51774 0.67 0.952292
Target:  5'- -aUGCAaucGCCCgGCGCGAACUUGg-- -3'
miRNA:   3'- gcACGUau-UGGG-CGCGCUUGGACagg -5'
24546 3' -53.8 NC_005264.1 + 134683 0.67 0.952292
Target:  5'- uCG-GCAcgacuuGCCUGCGCGAuguccCCUGcCCg -3'
miRNA:   3'- -GCaCGUau----UGGGCGCGCUu----GGACaGG- -5'
24546 3' -53.8 NC_005264.1 + 30290 0.67 0.952292
Target:  5'- --cGCGccGCCCGCaucucgacucGCGAuUCUGUCCg -3'
miRNA:   3'- gcaCGUauUGGGCG----------CGCUuGGACAGG- -5'
24546 3' -53.8 NC_005264.1 + 47778 0.67 0.952292
Target:  5'- gCGUGUcaaAUGGCCUGCGgGGAg-UGUCCu -3'
miRNA:   3'- -GCACG---UAUUGGGCGCgCUUggACAGG- -5'
24546 3' -53.8 NC_005264.1 + 58213 0.67 0.948133
Target:  5'- aCGaGCG-GGCgCCGCaCGAcgGCCUGUCCg -3'
miRNA:   3'- -GCaCGUaUUG-GGCGcGCU--UGGACAGG- -5'
24546 3' -53.8 NC_005264.1 + 101920 0.67 0.948133
Target:  5'- gCGUggGCGUGGCaaguguUCGUGCuGAugCUGUCCu -3'
miRNA:   3'- -GCA--CGUAUUG------GGCGCG-CUugGACAGG- -5'
24546 3' -53.8 NC_005264.1 + 111040 0.67 0.94374
Target:  5'- --aGCgGUGGCUCGCGCGGACUcG-CCg -3'
miRNA:   3'- gcaCG-UAUUGGGCGCGCUUGGaCaGG- -5'
24546 3' -53.8 NC_005264.1 + 65628 0.67 0.94374
Target:  5'- uCGUGgGU-ACCCGCGCGcgcACCgGUaaCCa -3'
miRNA:   3'- -GCACgUAuUGGGCGCGCu--UGGaCA--GG- -5'
24546 3' -53.8 NC_005264.1 + 666 0.67 0.94374
Target:  5'- --aGCGaugAGCCUGaCGgGAGCCUGcCCg -3'
miRNA:   3'- gcaCGUa--UUGGGC-GCgCUUGGACaGG- -5'
24546 3' -53.8 NC_005264.1 + 134904 0.68 0.939111
Target:  5'- --cGCGgcGCCCGUugGCGAACUgcucGUCCc -3'
miRNA:   3'- gcaCGUauUGGGCG--CGCUUGGa---CAGG- -5'
24546 3' -53.8 NC_005264.1 + 121420 0.68 0.939111
Target:  5'- --cGCAggAGCCCgGCGCcGGCCUG-CCu -3'
miRNA:   3'- gcaCGUa-UUGGG-CGCGcUUGGACaGG- -5'
24546 3' -53.8 NC_005264.1 + 5943 0.68 0.939111
Target:  5'- aCG-GCccgAACCCGCgGCGuuGCCUGUUg -3'
miRNA:   3'- -GCaCGua-UUGGGCG-CGCu-UGGACAGg -5'
24546 3' -53.8 NC_005264.1 + 105851 0.68 0.939111
Target:  5'- uCGUGCAUGGCCC-UGUucGCCgUGUUCc -3'
miRNA:   3'- -GCACGUAUUGGGcGCGcuUGG-ACAGG- -5'
24546 3' -53.8 NC_005264.1 + 160633 0.68 0.939111
Target:  5'- --cGCAggAGCCCgGCGCcGGCCUG-CCu -3'
miRNA:   3'- gcaCGUa-UUGGG-CGCGcUUGGACaGG- -5'
24546 3' -53.8 NC_005264.1 + 60809 0.68 0.934244
Target:  5'- -cUGCugcuCCUGCGCGAGCCggcugCCg -3'
miRNA:   3'- gcACGuauuGGGCGCGCUUGGaca--GG- -5'
24546 3' -53.8 NC_005264.1 + 58368 0.68 0.934244
Target:  5'- --gGCGgGGCCgGCGCGAuaugcGCCggauUGUCCa -3'
miRNA:   3'- gcaCGUaUUGGgCGCGCU-----UGG----ACAGG- -5'
24546 3' -53.8 NC_005264.1 + 80517 0.68 0.929139
Target:  5'- ------cGACCCGCGCGgAGCCauUGUCUg -3'
miRNA:   3'- gcacguaUUGGGCGCGC-UUGG--ACAGG- -5'
24546 3' -53.8 NC_005264.1 + 128993 0.68 0.929139
Target:  5'- -cUGCcgGACCCGUGCGGcgauGCCgaGcCCa -3'
miRNA:   3'- gcACGuaUUGGGCGCGCU----UGGa-CaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.