miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24546 3' -53.8 NC_005264.1 + 63166 0.68 0.922143
Target:  5'- --gGCAUGAacccugCCGCGUGGGCCccgaaaagcuggaaUGUCCa -3'
miRNA:   3'- gcaCGUAUUg-----GGCGCGCUUGG--------------ACAGG- -5'
24546 3' -53.8 NC_005264.1 + 113617 0.69 0.879753
Target:  5'- uCGUGCAUGACCUGuCGCGuuuCCagGUa- -3'
miRNA:   3'- -GCACGUAUUGGGC-GCGCuu-GGa-CAgg -5'
24546 3' -53.8 NC_005264.1 + 82201 0.66 0.969725
Target:  5'- cCGUGuCGUGG-CCGCGCGu-CCaucGUCCu -3'
miRNA:   3'- -GCAC-GUAUUgGGCGCGCuuGGa--CAGG- -5'
24546 3' -53.8 NC_005264.1 + 78016 0.67 0.955067
Target:  5'- gCGUGCAUGACggcgaggcuucgcuCCGUGCGccaugcCCUG-CCu -3'
miRNA:   3'- -GCACGUAUUG--------------GGCGCGCuu----GGACaGG- -5'
24546 3' -53.8 NC_005264.1 + 105851 0.68 0.939111
Target:  5'- uCGUGCAUGGCCC-UGUucGCCgUGUUCc -3'
miRNA:   3'- -GCACGUAUUGGGcGCGcuUGG-ACAGG- -5'
24546 3' -53.8 NC_005264.1 + 123759 0.7 0.865125
Target:  5'- --cGCu--GCCCGC-CGAGCCggcGUCCg -3'
miRNA:   3'- gcaCGuauUGGGCGcGCUUGGa--CAGG- -5'
24546 3' -53.8 NC_005264.1 + 51774 0.67 0.952292
Target:  5'- -aUGCAaucGCCCgGCGCGAACUUGg-- -3'
miRNA:   3'- gcACGUau-UGGG-CGCGCUUGGACagg -5'
24546 3' -53.8 NC_005264.1 + 84160 0.7 0.865125
Target:  5'- gGUcGCAgcGCgCGCGcCGGACCUGUUUa -3'
miRNA:   3'- gCA-CGUauUGgGCGC-GCUUGGACAGG- -5'
24546 3' -53.8 NC_005264.1 + 19051 0.7 0.857494
Target:  5'- gGUGCAUAaauACCCGCGgGAAgCgcgcuUCCc -3'
miRNA:   3'- gCACGUAU---UGGGCGCgCUUgGac---AGG- -5'
24546 3' -53.8 NC_005264.1 + 5943 0.68 0.939111
Target:  5'- aCG-GCccgAACCCGCgGCGuuGCCUGUUg -3'
miRNA:   3'- -GCaCGua-UUGGGCG-CGCu-UGGACAGg -5'
24546 3' -53.8 NC_005264.1 + 117315 0.66 0.975223
Target:  5'- gCGUGCGacugagaAGCgUGCGCGggUC-GUCCc -3'
miRNA:   3'- -GCACGUa------UUGgGCGCGCuuGGaCAGG- -5'
24546 3' -53.8 NC_005264.1 + 128993 0.68 0.929139
Target:  5'- -cUGCcgGACCCGUGCGGcgauGCCgaGcCCa -3'
miRNA:   3'- gcACGuaUUGGGCGCGCU----UGGa-CaGG- -5'
24546 3' -53.8 NC_005264.1 + 111040 0.67 0.94374
Target:  5'- --aGCgGUGGCUCGCGCGGACUcG-CCg -3'
miRNA:   3'- gcaCG-UAUUGGGCGCGCUUGGaCaGG- -5'
24546 3' -53.8 NC_005264.1 + 75219 0.67 0.956222
Target:  5'- -cUGCAUcGGCCCuGCGCGGcgGCC-GUCUu -3'
miRNA:   3'- gcACGUA-UUGGG-CGCGCU--UGGaCAGG- -5'
24546 3' -53.8 NC_005264.1 + 76000 0.66 0.966671
Target:  5'- --cGCAUAAUCgGCGUGAGCacguUCCa -3'
miRNA:   3'- gcaCGUAUUGGgCGCGCUUGgac-AGG- -5'
24546 3' -53.8 NC_005264.1 + 22853 0.68 0.918208
Target:  5'- aCGgGCG-AGgCCGCGCGAACCUaUCg -3'
miRNA:   3'- -GCaCGUaUUgGGCGCGCUUGGAcAGg -5'
24546 3' -53.8 NC_005264.1 + 39639 0.68 0.918208
Target:  5'- uGUGguUuugCCGCGCG-GCCUcGUCCa -3'
miRNA:   3'- gCACguAuugGGCGCGCuUGGA-CAGG- -5'
24546 3' -53.8 NC_005264.1 + 134683 0.67 0.952292
Target:  5'- uCG-GCAcgacuuGCCUGCGCGAuguccCCUGcCCg -3'
miRNA:   3'- -GCaCGUau----UGGGCGCGCUu----GGACaGG- -5'
24546 3' -53.8 NC_005264.1 + 46594 0.76 0.530285
Target:  5'- gCGUGCA--GCCuCGCgGCGGACCUGgCCc -3'
miRNA:   3'- -GCACGUauUGG-GCG-CGCUUGGACaGG- -5'
24546 3' -53.8 NC_005264.1 + 38718 0.75 0.590617
Target:  5'- aCGU-CAUGACaCUGCGCGcuaauCCUGUCCa -3'
miRNA:   3'- -GCAcGUAUUG-GGCGCGCuu---GGACAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.