miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24546 3' -53.8 NC_005264.1 + 2591 1.13 0.002951
Target:  5'- cCGUGCAUAACCCGCGCGAACCUGUCCg -3'
miRNA:   3'- -GCACGUAUUGGGCGCGCUUGGACAGG- -5'
24546 3' -53.8 NC_005264.1 + 128993 0.68 0.929139
Target:  5'- -cUGCcgGACCCGUGCGGcgauGCCgaGcCCa -3'
miRNA:   3'- gcACGuaUUGGGCGCGCU----UGGa-CaGG- -5'
24546 3' -53.8 NC_005264.1 + 105851 0.68 0.939111
Target:  5'- uCGUGCAUGGCCC-UGUucGCCgUGUUCc -3'
miRNA:   3'- -GCACGUAUUGGGcGCGcuUGG-ACAGG- -5'
24546 3' -53.8 NC_005264.1 + 53249 0.66 0.975223
Target:  5'- cCGUGC----CCCGCGgGcGCgUGUCUg -3'
miRNA:   3'- -GCACGuauuGGGCGCgCuUGgACAGG- -5'
24546 3' -53.8 NC_005264.1 + 16748 0.72 0.752095
Target:  5'- -aUGCGUAguccaccaagACCCGCGCGGgggcGCgCUGUUCg -3'
miRNA:   3'- gcACGUAU----------UGGGCGCGCU----UG-GACAGG- -5'
24546 3' -53.8 NC_005264.1 + 80326 0.72 0.780474
Target:  5'- cCGUGCcagacaAUGGCuCCGCGCGggUCggGUCg -3'
miRNA:   3'- -GCACG------UAUUG-GGCGCGCuuGGa-CAGg -5'
24546 3' -53.8 NC_005264.1 + 390 0.71 0.798742
Target:  5'- --gGCAgcGCCgGCGCGGucguguACCUGUUCg -3'
miRNA:   3'- gcaCGUauUGGgCGCGCU------UGGACAGG- -5'
24546 3' -53.8 NC_005264.1 + 133966 0.71 0.816406
Target:  5'- --aGCAguucaugaaaccUAGCCCGCGCGGGCC-GUUUa -3'
miRNA:   3'- gcaCGU------------AUUGGGCGCGCUUGGaCAGG- -5'
24546 3' -53.8 NC_005264.1 + 84160 0.7 0.865125
Target:  5'- gGUcGCAgcGCgCGCGcCGGACCUGUUUa -3'
miRNA:   3'- gCA-CGUauUGgGCGC-GCUUGGACAGG- -5'
24546 3' -53.8 NC_005264.1 + 63166 0.68 0.922143
Target:  5'- --gGCAUGAacccugCCGCGUGGGCCccgaaaagcuggaaUGUCCa -3'
miRNA:   3'- gcaCGUAUUg-----GGCGCGCUUGG--------------ACAGG- -5'
24546 3' -53.8 NC_005264.1 + 113617 0.69 0.879753
Target:  5'- uCGUGCAUGACCUGuCGCGuuuCCagGUa- -3'
miRNA:   3'- -GCACGUAUUGGGC-GCGCuu-GGa-CAgg -5'
24546 3' -53.8 NC_005264.1 + 19051 0.7 0.857494
Target:  5'- gGUGCAUAaauACCCGCGgGAAgCgcgcuUCCc -3'
miRNA:   3'- gCACGUAU---UGGGCGCgCUUgGac---AGG- -5'
24546 3' -53.8 NC_005264.1 + 114747 0.76 0.550188
Target:  5'- gCGUGCAgAACCCGCGCG-GCCgcgGUa- -3'
miRNA:   3'- -GCACGUaUUGGGCGCGCuUGGa--CAgg -5'
24546 3' -53.8 NC_005264.1 + 39639 0.68 0.918208
Target:  5'- uGUGguUuugCCGCGCG-GCCUcGUCCa -3'
miRNA:   3'- gCACguAuugGGCGCGCuUGGA-CAGG- -5'
24546 3' -53.8 NC_005264.1 + 79335 0.72 0.742412
Target:  5'- gCGUGCGUAGCgUGCGCGcugcucUCUGUUCu -3'
miRNA:   3'- -GCACGUAUUGgGCGCGCuu----GGACAGG- -5'
24546 3' -53.8 NC_005264.1 + 150155 0.7 0.849657
Target:  5'- cCGgGCGUggUCCGCGaCGGACCcGUgCg -3'
miRNA:   3'- -GCaCGUAuuGGGCGC-GCUUGGaCAgG- -5'
24546 3' -53.8 NC_005264.1 + 22853 0.68 0.918208
Target:  5'- aCGgGCG-AGgCCGCGCGAACCUaUCg -3'
miRNA:   3'- -GCaCGUaUUgGGCGCGCUUGGAcAGg -5'
24546 3' -53.8 NC_005264.1 + 58368 0.68 0.934244
Target:  5'- --gGCGgGGCCgGCGCGAuaugcGCCggauUGUCCa -3'
miRNA:   3'- gcaCGUaUUGGgCGCGCU-----UGG----ACAGG- -5'
24546 3' -53.8 NC_005264.1 + 126028 0.72 0.752095
Target:  5'- uCG-GCGUGGCCCGCGgCGGcuCCUcUCCa -3'
miRNA:   3'- -GCaCGUAUUGGGCGC-GCUu-GGAcAGG- -5'
24546 3' -53.8 NC_005264.1 + 3819 0.71 0.798742
Target:  5'- gGUGCuc--CCUGCGCGcggaGACCUGcUCCu -3'
miRNA:   3'- gCACGuauuGGGCGCGC----UUGGAC-AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.