Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24546 | 3' | -53.8 | NC_005264.1 | + | 96843 | 0.68 | 0.912384 |
Target: 5'- gGUGCGcUAACgCCGCGCgcgacgguuuuGAACUUG-CCg -3' miRNA: 3'- gCACGU-AUUG-GGCGCG-----------CUUGGACaGG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 98460 | 0.67 | 0.952292 |
Target: 5'- --cGCu--GCCCaGCGCGAACaC-GUCCa -3' miRNA: 3'- gcaCGuauUGGG-CGCGCUUG-GaCAGG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 47778 | 0.67 | 0.952292 |
Target: 5'- gCGUGUcaaAUGGCCUGCGgGGAg-UGUCCu -3' miRNA: 3'- -GCACG---UAUUGGGCGCgCUUggACAGG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 134683 | 0.67 | 0.952292 |
Target: 5'- uCG-GCAcgacuuGCCUGCGCGAuguccCCUGcCCg -3' miRNA: 3'- -GCaCGUau----UGGGCGCGCUu----GGACaGG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 101920 | 0.67 | 0.948133 |
Target: 5'- gCGUggGCGUGGCaaguguUCGUGCuGAugCUGUCCu -3' miRNA: 3'- -GCA--CGUAUUG------GGCGCG-CUugGACAGG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 58213 | 0.67 | 0.948133 |
Target: 5'- aCGaGCG-GGCgCCGCaCGAcgGCCUGUCCg -3' miRNA: 3'- -GCaCGUaUUG-GGCGcGCU--UGGACAGG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 160633 | 0.68 | 0.939111 |
Target: 5'- --cGCAggAGCCCgGCGCcGGCCUG-CCu -3' miRNA: 3'- gcaCGUa-UUGGG-CGCGcUUGGACaGG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 60809 | 0.68 | 0.934244 |
Target: 5'- -cUGCugcuCCUGCGCGAGCCggcugCCg -3' miRNA: 3'- gcACGuauuGGGCGCGCUUGGaca--GG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 80517 | 0.68 | 0.929139 |
Target: 5'- ------cGACCCGCGCGgAGCCauUGUCUg -3' miRNA: 3'- gcacguaUUGGGCGCGC-UUGG--ACAGG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 30290 | 0.67 | 0.952292 |
Target: 5'- --cGCGccGCCCGCaucucgacucGCGAuUCUGUCCg -3' miRNA: 3'- gcaCGUauUGGGCG----------CGCUuGGACAGG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 54993 | 0.66 | 0.963406 |
Target: 5'- -uUGCGUGgaacACCCG-GCGAcuaugacgGCCUGcCCg -3' miRNA: 3'- gcACGUAU----UGGGCgCGCU--------UGGACaGG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 66134 | 0.66 | 0.969725 |
Target: 5'- --gGCAUGGCggCGCGCGAGggcgcggcaaauCCUGUCa -3' miRNA: 3'- gcaCGUAUUGg-GCGCGCUU------------GGACAGg -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 41133 | 0.66 | 0.975223 |
Target: 5'- aCGaGCA--AgCCGCGCGAugCggGUCUg -3' miRNA: 3'- -GCaCGUauUgGGCGCGCUugGa-CAGG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 85200 | 0.66 | 0.975223 |
Target: 5'- gCGgcaCAUGGCCUGCGacaaGAacaACCgUGUCCg -3' miRNA: 3'- -GCac-GUAUUGGGCGCg---CU---UGG-ACAGG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 105679 | 0.66 | 0.975223 |
Target: 5'- --gGCGUuuAGCCC-CGCGAACgUGggugCCg -3' miRNA: 3'- gcaCGUA--UUGGGcGCGCUUGgACa---GG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 107049 | 0.66 | 0.975223 |
Target: 5'- uCGUGCccgcccAUGACCC-CGCagauGAACgaGUCCc -3' miRNA: 3'- -GCACG------UAUUGGGcGCG----CUUGgaCAGG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 106611 | 0.66 | 0.975223 |
Target: 5'- uCGUGCAggaucuucgugAGCCCGCG-GuGCUUG-CCg -3' miRNA: 3'- -GCACGUa----------UUGGGCGCgCuUGGACaGG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 146101 | 0.66 | 0.972573 |
Target: 5'- --cGCGcUGACCCGcCGCcGGAgCUGuUCCa -3' miRNA: 3'- gcaCGU-AUUGGGC-GCG-CUUgGAC-AGG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 22699 | 0.66 | 0.969725 |
Target: 5'- -aUGCAUuACCUGCGgGGGCCcagagaUGcCCg -3' miRNA: 3'- gcACGUAuUGGGCGCgCUUGG------ACaGG- -5' |
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24546 | 3' | -53.8 | NC_005264.1 | + | 150732 | 0.66 | 0.969725 |
Target: 5'- aCG-GCccucCCCGCcCGAGCCUGgagCCg -3' miRNA: 3'- -GCaCGuauuGGGCGcGCUUGGACa--GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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