miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24546 3' -53.8 NC_005264.1 + 390 0.71 0.798742
Target:  5'- --gGCAgcGCCgGCGCGGucguguACCUGUUCg -3'
miRNA:   3'- gcaCGUauUGGgCGCGCU------UGGACAGG- -5'
24546 3' -53.8 NC_005264.1 + 666 0.67 0.94374
Target:  5'- --aGCGaugAGCCUGaCGgGAGCCUGcCCg -3'
miRNA:   3'- gcaCGUa--UUGGGC-GCgCUUGGACaGG- -5'
24546 3' -53.8 NC_005264.1 + 2591 1.13 0.002951
Target:  5'- cCGUGCAUAACCCGCGCGAACCUGUCCg -3'
miRNA:   3'- -GCACGUAUUGGGCGCGCUUGGACAGG- -5'
24546 3' -53.8 NC_005264.1 + 3819 0.71 0.798742
Target:  5'- gGUGCuc--CCUGCGCGcggaGACCUGcUCCu -3'
miRNA:   3'- gCACGuauuGGGCGCGC----UUGGAC-AGG- -5'
24546 3' -53.8 NC_005264.1 + 5943 0.68 0.939111
Target:  5'- aCG-GCccgAACCCGCgGCGuuGCCUGUUg -3'
miRNA:   3'- -GCaCGua-UUGGGCG-CGCu-UGGACAGg -5'
24546 3' -53.8 NC_005264.1 + 16748 0.72 0.752095
Target:  5'- -aUGCGUAguccaccaagACCCGCGCGGgggcGCgCUGUUCg -3'
miRNA:   3'- gcACGUAU----------UGGGCGCGCU----UG-GACAGG- -5'
24546 3' -53.8 NC_005264.1 + 19051 0.7 0.857494
Target:  5'- gGUGCAUAaauACCCGCGgGAAgCgcgcuUCCc -3'
miRNA:   3'- gCACGUAU---UGGGCGCgCUUgGac---AGG- -5'
24546 3' -53.8 NC_005264.1 + 22699 0.66 0.969725
Target:  5'- -aUGCAUuACCUGCGgGGGCCcagagaUGcCCg -3'
miRNA:   3'- gcACGUAuUGGGCGCgCUUGG------ACaGG- -5'
24546 3' -53.8 NC_005264.1 + 22853 0.68 0.918208
Target:  5'- aCGgGCG-AGgCCGCGCGAACCUaUCg -3'
miRNA:   3'- -GCaCGUaUUgGGCGCGCUUGGAcAGg -5'
24546 3' -53.8 NC_005264.1 + 30290 0.67 0.952292
Target:  5'- --cGCGccGCCCGCaucucgacucGCGAuUCUGUCCg -3'
miRNA:   3'- gcaCGUauUGGGCG----------CGCUuGGACAGG- -5'
24546 3' -53.8 NC_005264.1 + 38718 0.75 0.590617
Target:  5'- aCGU-CAUGACaCUGCGCGcuaauCCUGUCCa -3'
miRNA:   3'- -GCAcGUAUUG-GGCGCGCuu---GGACAGG- -5'
24546 3' -53.8 NC_005264.1 + 39447 0.66 0.975223
Target:  5'- --cGCGU-ACCCG-GCGA-CCcGUCCa -3'
miRNA:   3'- gcaCGUAuUGGGCgCGCUuGGaCAGG- -5'
24546 3' -53.8 NC_005264.1 + 39639 0.68 0.918208
Target:  5'- uGUGguUuugCCGCGCG-GCCUcGUCCa -3'
miRNA:   3'- gCACguAuugGGCGCGCuUGGA-CAGG- -5'
24546 3' -53.8 NC_005264.1 + 41133 0.66 0.975223
Target:  5'- aCGaGCA--AgCCGCGCGAugCggGUCUg -3'
miRNA:   3'- -GCaCGUauUgGGCGCGCUugGa-CAGG- -5'
24546 3' -53.8 NC_005264.1 + 46594 0.76 0.530285
Target:  5'- gCGUGCA--GCCuCGCgGCGGACCUGgCCc -3'
miRNA:   3'- -GCACGUauUGG-GCG-CGCUUGGACaGG- -5'
24546 3' -53.8 NC_005264.1 + 47778 0.67 0.952292
Target:  5'- gCGUGUcaaAUGGCCUGCGgGGAg-UGUCCu -3'
miRNA:   3'- -GCACG---UAUUGGGCGCgCUUggACAGG- -5'
24546 3' -53.8 NC_005264.1 + 51774 0.67 0.952292
Target:  5'- -aUGCAaucGCCCgGCGCGAACUUGg-- -3'
miRNA:   3'- gcACGUau-UGGG-CGCGCUUGGACagg -5'
24546 3' -53.8 NC_005264.1 + 52128 0.67 0.959925
Target:  5'- aGUGCGUGuUCCaGCGCGAuacaauUCaGUCCg -3'
miRNA:   3'- gCACGUAUuGGG-CGCGCUu-----GGaCAGG- -5'
24546 3' -53.8 NC_005264.1 + 53249 0.66 0.975223
Target:  5'- cCGUGC----CCCGCGgGcGCgUGUCUg -3'
miRNA:   3'- -GCACGuauuGGGCGCgCuUGgACAGG- -5'
24546 3' -53.8 NC_005264.1 + 54993 0.66 0.963406
Target:  5'- -uUGCGUGgaacACCCG-GCGAcuaugacgGCCUGcCCg -3'
miRNA:   3'- gcACGUAU----UGGGCgCGCU--------UGGACaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.