miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24546 3' -53.8 NC_005264.1 + 160633 0.68 0.939111
Target:  5'- --cGCAggAGCCCgGCGCcGGCCUG-CCu -3'
miRNA:   3'- gcaCGUa-UUGGG-CGCGcUUGGACaGG- -5'
24546 3' -53.8 NC_005264.1 + 158293 0.7 0.865125
Target:  5'- --cGCu--GCCCGC-CGAGCCggcGUCCg -3'
miRNA:   3'- gcaCGuauUGGGCGcGCUUGGa--CAGG- -5'
24546 3' -53.8 NC_005264.1 + 156025 0.72 0.752095
Target:  5'- uCG-GCGUGGCCCGCGgCGGcuCCUcUCCa -3'
miRNA:   3'- -GCaCGUAUUGGGCGC-GCUu-GGAcAGG- -5'
24546 3' -53.8 NC_005264.1 + 150732 0.66 0.969725
Target:  5'- aCG-GCccucCCCGCcCGAGCCUGgagCCg -3'
miRNA:   3'- -GCaCGuauuGGGCGcGCUUGGACa--GG- -5'
24546 3' -53.8 NC_005264.1 + 150155 0.7 0.849657
Target:  5'- cCGgGCGUggUCCGCGaCGGACCcGUgCg -3'
miRNA:   3'- -GCaCGUAuuGGGCGC-GCUUGGaCAgG- -5'
24546 3' -53.8 NC_005264.1 + 146101 0.66 0.972573
Target:  5'- --cGCGcUGACCCGcCGCcGGAgCUGuUCCa -3'
miRNA:   3'- gcaCGU-AUUGGGC-GCG-CUUgGAC-AGG- -5'
24546 3' -53.8 NC_005264.1 + 134904 0.68 0.939111
Target:  5'- --cGCGgcGCCCGUugGCGAACUgcucGUCCc -3'
miRNA:   3'- gcaCGUauUGGGCG--CGCUUGGa---CAGG- -5'
24546 3' -53.8 NC_005264.1 + 134683 0.67 0.952292
Target:  5'- uCG-GCAcgacuuGCCUGCGCGAuguccCCUGcCCg -3'
miRNA:   3'- -GCaCGUau----UGGGCGCGCUu----GGACaGG- -5'
24546 3' -53.8 NC_005264.1 + 133966 0.71 0.816406
Target:  5'- --aGCAguucaugaaaccUAGCCCGCGCGGGCC-GUUUa -3'
miRNA:   3'- gcaCGU------------AUUGGGCGCGCUUGGaCAGG- -5'
24546 3' -53.8 NC_005264.1 + 131898 0.7 0.849657
Target:  5'- cCGgGCGUggUCCGCGaCGGACCcGUgCg -3'
miRNA:   3'- -GCaCGUAuuGGGCGC-GCUUGGaCAgG- -5'
24546 3' -53.8 NC_005264.1 + 131321 0.66 0.969725
Target:  5'- aCG-GCccucCCCGCcCGAGCCUGgagCCg -3'
miRNA:   3'- -GCaCGuauuGGGCGcGCUUGGACa--GG- -5'
24546 3' -53.8 NC_005264.1 + 128993 0.68 0.929139
Target:  5'- -cUGCcgGACCCGUGCGGcgauGCCgaGcCCa -3'
miRNA:   3'- gcACGuaUUGGGCGCGCU----UGGa-CaGG- -5'
24546 3' -53.8 NC_005264.1 + 126028 0.72 0.752095
Target:  5'- uCG-GCGUGGCCCGCGgCGGcuCCUcUCCa -3'
miRNA:   3'- -GCaCGUAUUGGGCGC-GCUu-GGAcAGG- -5'
24546 3' -53.8 NC_005264.1 + 123759 0.7 0.865125
Target:  5'- --cGCu--GCCCGC-CGAGCCggcGUCCg -3'
miRNA:   3'- gcaCGuauUGGGCGcGCUUGGa--CAGG- -5'
24546 3' -53.8 NC_005264.1 + 121420 0.68 0.939111
Target:  5'- --cGCAggAGCCCgGCGCcGGCCUG-CCu -3'
miRNA:   3'- gcaCGUa-UUGGG-CGCGcUUGGACaGG- -5'
24546 3' -53.8 NC_005264.1 + 117315 0.66 0.975223
Target:  5'- gCGUGCGacugagaAGCgUGCGCGggUC-GUCCc -3'
miRNA:   3'- -GCACGUa------UUGgGCGCGCuuGGaCAGG- -5'
24546 3' -53.8 NC_005264.1 + 114747 0.76 0.550188
Target:  5'- gCGUGCAgAACCCGCGCG-GCCgcgGUa- -3'
miRNA:   3'- -GCACGUaUUGGGCGCGCuUGGa--CAgg -5'
24546 3' -53.8 NC_005264.1 + 113617 0.69 0.879753
Target:  5'- uCGUGCAUGACCUGuCGCGuuuCCagGUa- -3'
miRNA:   3'- -GCACGUAUUGGGC-GCGCuu-GGa-CAgg -5'
24546 3' -53.8 NC_005264.1 + 111040 0.67 0.94374
Target:  5'- --aGCgGUGGCUCGCGCGGACUcG-CCg -3'
miRNA:   3'- gcaCG-UAUUGGGCGCGCUUGGaCaGG- -5'
24546 3' -53.8 NC_005264.1 + 107049 0.66 0.975223
Target:  5'- uCGUGCccgcccAUGACCC-CGCagauGAACgaGUCCc -3'
miRNA:   3'- -GCACG------UAUUGGGcGCG----CUUGgaCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.