miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24546 3' -53.8 NC_005264.1 + 2591 1.13 0.002951
Target:  5'- cCGUGCAUAACCCGCGCGAACCUGUCCg -3'
miRNA:   3'- -GCACGUAUUGGGCGCGCUUGGACAGG- -5'
24546 3' -53.8 NC_005264.1 + 91398 0.77 0.491326
Target:  5'- gCGgcgGCAgagaUAGCCCaguGCGCGAACCUGUgCg -3'
miRNA:   3'- -GCa--CGU----AUUGGG---CGCGCUUGGACAgG- -5'
24546 3' -53.8 NC_005264.1 + 46594 0.76 0.530285
Target:  5'- gCGUGCA--GCCuCGCgGCGGACCUGgCCc -3'
miRNA:   3'- -GCACGUauUGG-GCG-CGCUUGGACaGG- -5'
24546 3' -53.8 NC_005264.1 + 114747 0.76 0.550188
Target:  5'- gCGUGCAgAACCCGCGCG-GCCgcgGUa- -3'
miRNA:   3'- -GCACGUaUUGGGCGCGCuUGGa--CAgg -5'
24546 3' -53.8 NC_005264.1 + 38718 0.75 0.590617
Target:  5'- aCGU-CAUGACaCUGCGCGcuaauCCUGUCCa -3'
miRNA:   3'- -GCAcGUAUUG-GGCGCGCuu---GGACAGG- -5'
24546 3' -53.8 NC_005264.1 + 79335 0.72 0.742412
Target:  5'- gCGUGCGUAGCgUGCGCGcugcucUCUGUUCu -3'
miRNA:   3'- -GCACGUAUUGgGCGCGCuu----GGACAGG- -5'
24546 3' -53.8 NC_005264.1 + 126028 0.72 0.752095
Target:  5'- uCG-GCGUGGCCCGCGgCGGcuCCUcUCCa -3'
miRNA:   3'- -GCaCGUAUUGGGCGC-GCUu-GGAcAGG- -5'
24546 3' -53.8 NC_005264.1 + 16748 0.72 0.752095
Target:  5'- -aUGCGUAguccaccaagACCCGCGCGGgggcGCgCUGUUCg -3'
miRNA:   3'- gcACGUAU----------UGGGCGCGCU----UG-GACAGG- -5'
24546 3' -53.8 NC_005264.1 + 156025 0.72 0.752095
Target:  5'- uCG-GCGUGGCCCGCGgCGGcuCCUcUCCa -3'
miRNA:   3'- -GCaCGUAUUGGGCGC-GCUu-GGAcAGG- -5'
24546 3' -53.8 NC_005264.1 + 73258 0.72 0.761673
Target:  5'- --aGUAgagAugCCGCGCGGGCCauccGUCCa -3'
miRNA:   3'- gcaCGUa--UugGGCGCGCUUGGa---CAGG- -5'
24546 3' -53.8 NC_005264.1 + 80326 0.72 0.780474
Target:  5'- cCGUGCcagacaAUGGCuCCGCGCGggUCggGUCg -3'
miRNA:   3'- -GCACG------UAUUG-GGCGCGCuuGGa-CAGg -5'
24546 3' -53.8 NC_005264.1 + 3819 0.71 0.798742
Target:  5'- gGUGCuc--CCUGCGCGcggaGACCUGcUCCu -3'
miRNA:   3'- gCACGuauuGGGCGCGC----UUGGAC-AGG- -5'
24546 3' -53.8 NC_005264.1 + 390 0.71 0.798742
Target:  5'- --gGCAgcGCCgGCGCGGucguguACCUGUUCg -3'
miRNA:   3'- gcaCGUauUGGgCGCGCU------UGGACAGG- -5'
24546 3' -53.8 NC_005264.1 + 133966 0.71 0.816406
Target:  5'- --aGCAguucaugaaaccUAGCCCGCGCGGGCC-GUUUa -3'
miRNA:   3'- gcaCGU------------AUUGGGCGCGCUUGGaCAGG- -5'
24546 3' -53.8 NC_005264.1 + 131898 0.7 0.849657
Target:  5'- cCGgGCGUggUCCGCGaCGGACCcGUgCg -3'
miRNA:   3'- -GCaCGUAuuGGGCGC-GCUUGGaCAgG- -5'
24546 3' -53.8 NC_005264.1 + 150155 0.7 0.849657
Target:  5'- cCGgGCGUggUCCGCGaCGGACCcGUgCg -3'
miRNA:   3'- -GCaCGUAuuGGGCGC-GCUUGGaCAgG- -5'
24546 3' -53.8 NC_005264.1 + 19051 0.7 0.857494
Target:  5'- gGUGCAUAaauACCCGCGgGAAgCgcgcuUCCc -3'
miRNA:   3'- gCACGUAU---UGGGCGCgCUUgGac---AGG- -5'
24546 3' -53.8 NC_005264.1 + 66780 0.7 0.857494
Target:  5'- aCGcgGCGcAGCCCaGCGaGAGCCUGUaCCa -3'
miRNA:   3'- -GCa-CGUaUUGGG-CGCgCUUGGACA-GG- -5'
24546 3' -53.8 NC_005264.1 + 158293 0.7 0.865125
Target:  5'- --cGCu--GCCCGC-CGAGCCggcGUCCg -3'
miRNA:   3'- gcaCGuauUGGGCGcGCUUGGa--CAGG- -5'
24546 3' -53.8 NC_005264.1 + 84160 0.7 0.865125
Target:  5'- gGUcGCAgcGCgCGCGcCGGACCUGUUUa -3'
miRNA:   3'- gCA-CGUauUGgGCGC-GCUUGGACAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.