miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24548 5' -59.7 NC_005264.1 + 152492 0.66 0.748197
Target:  5'- gUGcgGCGCCgcccUCagggGCGCGGauCGCgCGUUCg -3'
miRNA:   3'- -ACa-CGCGGa---AGa---CGCGCC--GCG-GCAAG- -5'
24548 5' -59.7 NC_005264.1 + 136667 0.9 0.028346
Target:  5'- uUGUGCGCCgcggcaggCUGCGCGGCGCCGUcUCu -3'
miRNA:   3'- -ACACGCGGaa------GACGCGCCGCGGCA-AG- -5'
24548 5' -59.7 NC_005264.1 + 87628 0.71 0.465078
Target:  5'- --cGCGCCaccgUCUGCGCGGcCGCgGg-- -3'
miRNA:   3'- acaCGCGGa---AGACGCGCC-GCGgCaag -5'
24548 5' -59.7 NC_005264.1 + 58938 0.71 0.474246
Target:  5'- cGUGCGCC-UCUGauagcgcaGCGGCgGCCGc-- -3'
miRNA:   3'- aCACGCGGaAGACg-------CGCCG-CGGCaag -5'
24548 5' -59.7 NC_005264.1 + 26852 0.69 0.560299
Target:  5'- ---aCGCCUuuuuugucguUCUaGCGCGGCGCCGg-- -3'
miRNA:   3'- acacGCGGA----------AGA-CGCGCCGCGGCaag -5'
24548 5' -59.7 NC_005264.1 + 142750 0.69 0.570169
Target:  5'- gGUGCGagaagauaCUugUCUGCGCGGUGUacgGUUCu -3'
miRNA:   3'- aCACGCg-------GA--AGACGCGCCGCGg--CAAG- -5'
24548 5' -59.7 NC_005264.1 + 18243 0.69 0.570169
Target:  5'- --cGCGCCcuggCU-CGCGGCGCCGccgcUUCg -3'
miRNA:   3'- acaCGCGGaa--GAcGCGCCGCGGC----AAG- -5'
24548 5' -59.7 NC_005264.1 + 32051 0.69 0.580081
Target:  5'- cGUGCGCCgaCcGCGaGGCGCUGg-- -3'
miRNA:   3'- aCACGCGGaaGaCGCgCCGCGGCaag -5'
24548 5' -59.7 NC_005264.1 + 42102 0.69 0.600006
Target:  5'- --aGCgGCUUUCUGCGCGGU--CGUUCu -3'
miRNA:   3'- acaCG-CGGAAGACGCGCCGcgGCAAG- -5'
24548 5' -59.7 NC_005264.1 + 13300 0.68 0.630047
Target:  5'- --aGCGCUUgCUGUaGUGGCGCCGg-- -3'
miRNA:   3'- acaCGCGGAaGACG-CGCCGCGGCaag -5'
24548 5' -59.7 NC_005264.1 + 77962 0.67 0.680041
Target:  5'- gGUGCGUC-UCUGCgGCcGCGUCGUc- -3'
miRNA:   3'- aCACGCGGaAGACG-CGcCGCGGCAag -5'
24548 5' -59.7 NC_005264.1 + 126270 0.66 0.738684
Target:  5'- --gGCGCCg---GC-CGGCGCCGUc- -3'
miRNA:   3'- acaCGCGGaagaCGcGCCGCGGCAag -5'
24548 5' -59.7 NC_005264.1 + 155960 0.66 0.738684
Target:  5'- --gGCGCCg---GC-CGGCGCCGUc- -3'
miRNA:   3'- acaCGCGGaagaCGcGCCGCGGCAag -5'
24548 5' -59.7 NC_005264.1 + 123818 0.67 0.7194
Target:  5'- --cGCGCCUacgCcGcCGCGGCGCUGg-- -3'
miRNA:   3'- acaCGCGGAa--GaC-GCGCCGCGGCaag -5'
24548 5' -59.7 NC_005264.1 + 31318 0.67 0.709647
Target:  5'- cGUGgGCC---UGCGCGGCGuuGc-- -3'
miRNA:   3'- aCACgCGGaagACGCGCCGCggCaag -5'
24548 5' -59.7 NC_005264.1 + 129747 0.67 0.709647
Target:  5'- --cGCGCCc-CUGaggGCGGCGCCGc-- -3'
miRNA:   3'- acaCGCGGaaGACg--CGCCGCGGCaag -5'
24548 5' -59.7 NC_005264.1 + 16756 0.67 0.69983
Target:  5'- aUGUGCGCCgcc-GCccCGGCGCCGc-- -3'
miRNA:   3'- -ACACGCGGaagaCGc-GCCGCGGCaag -5'
24548 5' -59.7 NC_005264.1 + 96715 0.67 0.670085
Target:  5'- -cUGCacuCCUgUUGCGCGGCGUCGUg- -3'
miRNA:   3'- acACGc--GGAaGACGCGCCGCGGCAag -5'
24548 5' -59.7 NC_005264.1 + 67378 0.66 0.766919
Target:  5'- --cGCGCUcgCUGCGCccgccGGCGCgGUa- -3'
miRNA:   3'- acaCGCGGaaGACGCG-----CCGCGgCAag -5'
24548 5' -59.7 NC_005264.1 + 46454 0.74 0.304222
Target:  5'- -cUGCGgCUUUUGCGCGGCGCUcUUUg -3'
miRNA:   3'- acACGCgGAAGACGCGCCGCGGcAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.