miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24575 3' -57 NC_005264.1 + 75153 0.69 0.761198
Target:  5'- aCGAGGGCcacgccAGAgUUGUGCaGUAGCGCg -3'
miRNA:   3'- gGCUCUCGc-----UCUgGACGCG-CAUCGUG- -5'
24575 3' -57 NC_005264.1 + 75194 0.66 0.880657
Target:  5'- gUCGGGGGCGAGAUugUUGaCGUGcagaggguuugccucUGGCGCg -3'
miRNA:   3'- -GGCUCUCGCUCUG--GAC-GCGC---------------AUCGUG- -5'
24575 3' -57 NC_005264.1 + 76243 0.66 0.884793
Target:  5'- gCGAGGcGCGAcGACC-GCGUGUcuCACg -3'
miRNA:   3'- gGCUCU-CGCU-CUGGaCGCGCAucGUG- -5'
24575 3' -57 NC_005264.1 + 80502 0.7 0.703234
Target:  5'- gCCGAGAGCGAGaacaucGCC-GCG-GU-GCGCa -3'
miRNA:   3'- -GGCUCUCGCUC------UGGaCGCgCAuCGUG- -5'
24575 3' -57 NC_005264.1 + 82624 0.7 0.673345
Target:  5'- uUGGGAG-GGGAUaUGCGCGUGGCGu -3'
miRNA:   3'- gGCUCUCgCUCUGgACGCGCAUCGUg -5'
24575 3' -57 NC_005264.1 + 86891 0.69 0.722882
Target:  5'- uCCGguAGAGCG-GACUU-UGCGUGGCAUa -3'
miRNA:   3'- -GGC--UCUCGCuCUGGAcGCGCAUCGUG- -5'
24575 3' -57 NC_005264.1 + 87650 0.68 0.797738
Target:  5'- gUGGGGcGCGGGACCUG-GCGgcaacgGGCAg -3'
miRNA:   3'- gGCUCU-CGCUCUGGACgCGCa-----UCGUg -5'
24575 3' -57 NC_005264.1 + 88664 0.66 0.870707
Target:  5'- gCGAGAGCcAGucaauCUUGCGCcGUauGGCACc -3'
miRNA:   3'- gGCUCUCGcUCu----GGACGCG-CA--UCGUG- -5'
24575 3' -57 NC_005264.1 + 97717 0.66 0.891512
Target:  5'- aCCGAGGGCuuGGCgU-CGCGUucaccggaggccGGCACg -3'
miRNA:   3'- -GGCUCUCGcuCUGgAcGCGCA------------UCGUG- -5'
24575 3' -57 NC_005264.1 + 98098 0.7 0.703234
Target:  5'- --cAGGGCGAucCUUGCGCGgGGCACg -3'
miRNA:   3'- ggcUCUCGCUcuGGACGCGCaUCGUG- -5'
24575 3' -57 NC_005264.1 + 98765 0.71 0.622984
Target:  5'- gCGAGAGaacccacaggcCGAGACCUGCGCcUacuacuuaaAGCACc -3'
miRNA:   3'- gGCUCUC-----------GCUCUGGACGCGcA---------UCGUG- -5'
24575 3' -57 NC_005264.1 + 100066 0.75 0.430845
Target:  5'- -aGGGuuuGCGGGGCCUaGgGCGUAGCAUg -3'
miRNA:   3'- ggCUCu--CGCUCUGGA-CgCGCAUCGUG- -5'
24575 3' -57 NC_005264.1 + 100558 0.72 0.582766
Target:  5'- gCCGAGAucGCGGGACaaggGCGCaaAGCGCc -3'
miRNA:   3'- -GGCUCU--CGCUCUGga--CGCGcaUCGUG- -5'
24575 3' -57 NC_005264.1 + 101345 0.71 0.633073
Target:  5'- gCGcuAGcCGAGACCgcgggGCGCGUcGGCGCg -3'
miRNA:   3'- gGCucUC-GCUCUGGa----CGCGCA-UCGUG- -5'
24575 3' -57 NC_005264.1 + 102197 0.66 0.875734
Target:  5'- aCGAGcaGGCGGGGaucaagcugcugcuCCUGCGCG-AGC-Cg -3'
miRNA:   3'- gGCUC--UCGCUCU--------------GGACGCGCaUCGuG- -5'
24575 3' -57 NC_005264.1 + 103812 0.69 0.740308
Target:  5'- gCGGGAccGCGGGGCUUGCGCucgauucgcugAGCGCc -3'
miRNA:   3'- gGCUCU--CGCUCUGGACGCGca---------UCGUG- -5'
24575 3' -57 NC_005264.1 + 112175 0.66 0.89801
Target:  5'- -aGAuGGGCGAGuuugCUGCuaGCGUAGUACu -3'
miRNA:   3'- ggCU-CUCGCUCug--GACG--CGCAUCGUG- -5'
24575 3' -57 NC_005264.1 + 112612 0.68 0.815168
Target:  5'- aCUGGGAGCGGGGCCcGC-CGgu-CACg -3'
miRNA:   3'- -GGCUCUCGCUCUGGaCGcGCaucGUG- -5'
24575 3' -57 NC_005264.1 + 115592 0.67 0.840084
Target:  5'- uCCGgaGGAGUGGGGCCUGCucuGCGccaagAGCu- -3'
miRNA:   3'- -GGC--UCUCGCUCUGGACG---CGCa----UCGug -5'
24575 3' -57 NC_005264.1 + 115922 0.68 0.797738
Target:  5'- aCGAGcGGCGAGACCauaUGCGCGg----- -3'
miRNA:   3'- gGCUC-UCGCUCUGG---ACGCGCaucgug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.