miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24575 3' -57 NC_005264.1 + 39485 0.7 0.663306
Target:  5'- gCCGccaGGGGC-AGGCCUGCGCuGUGGUggACg -3'
miRNA:   3'- -GGC---UCUCGcUCUGGACGCG-CAUCG--UG- -5'
24575 3' -57 NC_005264.1 + 39573 0.67 0.848032
Target:  5'- gCCGGGAcUGAucuACCUuCGCGUGGCGCc -3'
miRNA:   3'- -GGCUCUcGCUc--UGGAcGCGCAUCGUG- -5'
24575 3' -57 NC_005264.1 + 40794 0.68 0.797738
Target:  5'- gCCGAGAGCgGAGccGCUUGCcGCGgGGuCGCc -3'
miRNA:   3'- -GGCUCUCG-CUC--UGGACG-CGCaUC-GUG- -5'
24575 3' -57 NC_005264.1 + 43069 0.76 0.356168
Target:  5'- gCGGGGG-GAGACCUcucGCGUGUAGCAg -3'
miRNA:   3'- gGCUCUCgCUCUGGA---CGCGCAUCGUg -5'
24575 3' -57 NC_005264.1 + 45408 0.68 0.770522
Target:  5'- -gGAGGGCGGcGcCCUGCGCGccGCGa -3'
miRNA:   3'- ggCUCUCGCU-CuGGACGCGCauCGUg -5'
24575 3' -57 NC_005264.1 + 47600 0.67 0.863349
Target:  5'- gCGuuGGGgGAGACUcGCGCGaacGGCGCg -3'
miRNA:   3'- gGCu-CUCgCUCUGGaCGCGCa--UCGUG- -5'
24575 3' -57 NC_005264.1 + 48791 0.68 0.779725
Target:  5'- gCCGgcGGGGCGAacGACCU-CGCGUuucccacagcggAGCGCa -3'
miRNA:   3'- -GGC--UCUCGCU--CUGGAcGCGCA------------UCGUG- -5'
24575 3' -57 NC_005264.1 + 49810 0.67 0.835227
Target:  5'- gUCGAGGuGCaGGGCCgcguauucuuuuuugUGCGCG-AGCACg -3'
miRNA:   3'- -GGCUCU-CGcUCUGG---------------ACGCGCaUCGUG- -5'
24575 3' -57 NC_005264.1 + 51762 0.71 0.643162
Target:  5'- uCUGAGAGCGAGAugcaaucgcCCgGCGCGaacuUGGCGu -3'
miRNA:   3'- -GGCUCUCGCUCU---------GGaCGCGC----AUCGUg -5'
24575 3' -57 NC_005264.1 + 52100 0.66 0.870707
Target:  5'- uUGAGGGCGAcgucaGACauaGCGCGUgAGUGCg -3'
miRNA:   3'- gGCUCUCGCU-----CUGga-CGCGCA-UCGUG- -5'
24575 3' -57 NC_005264.1 + 52446 0.69 0.751764
Target:  5'- cUCGAGccuGcCGAcGCCgUGCGCGUAGCAg -3'
miRNA:   3'- -GGCUCu--C-GCUcUGG-ACGCGCAUCGUg -5'
24575 3' -57 NC_005264.1 + 52883 0.7 0.703234
Target:  5'- gCGcGAGCGAgGGgCUGCGUgGUGGCAUg -3'
miRNA:   3'- gGCuCUCGCU-CUgGACGCG-CAUCGUG- -5'
24575 3' -57 NC_005264.1 + 53573 0.73 0.523587
Target:  5'- gCGcAGAGCGGcgcGGCUUGCGUuuuGUGGCACa -3'
miRNA:   3'- gGC-UCUCGCU---CUGGACGCG---CAUCGUG- -5'
24575 3' -57 NC_005264.1 + 53791 0.68 0.797738
Target:  5'- gUGGGAGCGGGAgCUGCuccGCGUGuuuaagauGCAUc -3'
miRNA:   3'- gGCUCUCGCUCUgGACG---CGCAU--------CGUG- -5'
24575 3' -57 NC_005264.1 + 56897 0.66 0.870707
Target:  5'- aCCGGGAacuggGCGAGcauuauggggcgGCgUacGUGCGUGGCGCa -3'
miRNA:   3'- -GGCUCU-----CGCUC------------UGgA--CGCGCAUCGUG- -5'
24575 3' -57 NC_005264.1 + 59768 0.67 0.824484
Target:  5'- aCGcGGAcgcuucGCGGGACUcgucgcccgcaggggGCGCGUAGCGCa -3'
miRNA:   3'- gGC-UCU------CGCUCUGGa--------------CGCGCAUCGUG- -5'
24575 3' -57 NC_005264.1 + 59992 0.74 0.466853
Target:  5'- gCCGcGAGCGAGACg-GcCGCGUGGcCGCg -3'
miRNA:   3'- -GGCuCUCGCUCUGgaC-GCGCAUC-GUG- -5'
24575 3' -57 NC_005264.1 + 67630 0.66 0.896084
Target:  5'- aCGcGGGCGcAGGgguguCCUGCGCGgcccgucuucguuaUGGCACg -3'
miRNA:   3'- gGCuCUCGC-UCU-----GGACGCGC--------------AUCGUG- -5'
24575 3' -57 NC_005264.1 + 71643 0.69 0.751764
Target:  5'- gCCcAGuGCGcGaACCUGUGCGUGGCGu -3'
miRNA:   3'- -GGcUCuCGCuC-UGGACGCGCAUCGUg -5'
24575 3' -57 NC_005264.1 + 72493 0.7 0.713091
Target:  5'- gCGucGGCGGGuugaagaucugcGCCgagagGCGCGUGGCGCu -3'
miRNA:   3'- gGCucUCGCUC------------UGGa----CGCGCAUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.