miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24575 3' -57 NC_005264.1 + 3470 0.68 0.7888
Target:  5'- cUCGGGGGCGAugGGCUUGC-CGccGCACg -3'
miRNA:   3'- -GGCUCUCGCU--CUGGACGcGCauCGUG- -5'
24575 3' -57 NC_005264.1 + 3664 0.74 0.461351
Target:  5'- gCUGGGGGCGAcuggcauuggugcggGGCCUgGCGCGgaaagGGCGCa -3'
miRNA:   3'- -GGCUCUCGCU---------------CUGGA-CGCGCa----UCGUG- -5'
24575 3' -57 NC_005264.1 + 3742 0.68 0.770522
Target:  5'- aCGAgGAGCGGGGCCucuUGCcGCcggGGCGCu -3'
miRNA:   3'- gGCU-CUCGCUCUGG---ACG-CGca-UCGUG- -5'
24575 3' -57 NC_005264.1 + 4070 0.68 0.779725
Target:  5'- cCCGAcAGCGGGGCUguugcacggGCGgCGUcgcGGCACg -3'
miRNA:   3'- -GGCUcUCGCUCUGGa--------CGC-GCA---UCGUG- -5'
24575 3' -57 NC_005264.1 + 6136 0.69 0.761198
Target:  5'- -gGAGGGCGAGGgCcGCGCGcccgucGCGCa -3'
miRNA:   3'- ggCUCUCGCUCUgGaCGCGCau----CGUG- -5'
24575 3' -57 NC_005264.1 + 6314 0.66 0.877856
Target:  5'- gCGc-GGCGAGGCUU-CGCGUGGCGu -3'
miRNA:   3'- gGCucUCGCUCUGGAcGCGCAUCGUg -5'
24575 3' -57 NC_005264.1 + 10517 0.7 0.717016
Target:  5'- cUCGccGAGCGGGuCCUGUGCGgcgccgcccucaggGGCGCg -3'
miRNA:   3'- -GGCu-CUCGCUCuGGACGCGCa-------------UCGUG- -5'
24575 3' -57 NC_005264.1 + 16054 0.72 0.572781
Target:  5'- aCGGGAGCGGcuauauGACCUGCgaacacacuGCG-AGCACu -3'
miRNA:   3'- gGCUCUCGCU------CUGGACG---------CGCaUCGUG- -5'
24575 3' -57 NC_005264.1 + 16377 0.67 0.848032
Target:  5'- gCUGGGGGgGAGGggaUGCcCGUGGCGCa -3'
miRNA:   3'- -GGCUCUCgCUCUgg-ACGcGCAUCGUG- -5'
24575 3' -57 NC_005264.1 + 16472 0.66 0.877151
Target:  5'- uCCGAcGAcgcagccGCGGuGGCCUGCGgGgucgaGGCACg -3'
miRNA:   3'- -GGCU-CU-------CGCU-CUGGACGCgCa----UCGUG- -5'
24575 3' -57 NC_005264.1 + 16520 0.71 0.621975
Target:  5'- gCCGAGAGUcAGgauagcucuuagcGCUUGCGCGUauuucAGCGCg -3'
miRNA:   3'- -GGCUCUCGcUC-------------UGGACGCGCA-----UCGUG- -5'
24575 3' -57 NC_005264.1 + 16743 0.67 0.840084
Target:  5'- cCCGAauGCGuaguccaccaAGACCcGCGCGggGGCGCg -3'
miRNA:   3'- -GGCUcuCGC----------UCUGGaCGCGCa-UCGUG- -5'
24575 3' -57 NC_005264.1 + 18548 0.67 0.823645
Target:  5'- gCCGGGAGaCGu-ACCccuguuUGCGCGcGGCACg -3'
miRNA:   3'- -GGCUCUC-GCucUGG------ACGCGCaUCGUG- -5'
24575 3' -57 NC_005264.1 + 27436 0.66 0.89801
Target:  5'- aUGAGgcuuucAGCcAGACCUGCGCcgagcGGCGCa -3'
miRNA:   3'- gGCUC------UCGcUCUGGACGCGca---UCGUG- -5'
24575 3' -57 NC_005264.1 + 30620 0.66 0.891512
Target:  5'- gCGGcGGCGAcgGAUCcGCGCGcAGCGCg -3'
miRNA:   3'- gGCUcUCGCU--CUGGaCGCGCaUCGUG- -5'
24575 3' -57 NC_005264.1 + 31460 0.69 0.742227
Target:  5'- aCGAGAGCGucGCCgauggGCGUGgaUGGUGCg -3'
miRNA:   3'- gGCUCUCGCucUGGa----CGCGC--AUCGUG- -5'
24575 3' -57 NC_005264.1 + 32275 1.12 0.001727
Target:  5'- gCCGAGAGCGAGACCUGCGCGUAGCACa -3'
miRNA:   3'- -GGCUCUCGCUCUGGACGCGCAUCGUG- -5'
24575 3' -57 NC_005264.1 + 33646 0.74 0.457703
Target:  5'- aCGAGGGCuGGGACCaaGCGgGUGGCGg -3'
miRNA:   3'- gGCUCUCG-CUCUGGa-CGCgCAUCGUg -5'
24575 3' -57 NC_005264.1 + 37120 0.67 0.831953
Target:  5'- aCGAGGGCGAGgcggccgucucgGCCUcGCuGC-UGGCGCc -3'
miRNA:   3'- gGCUCUCGCUC------------UGGA-CG-CGcAUCGUG- -5'
24575 3' -57 NC_005264.1 + 38829 0.66 0.870707
Target:  5'- aCGAGAaCGAcGACgaUGCGCG-GGCACc -3'
miRNA:   3'- gGCUCUcGCU-CUGg-ACGCGCaUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.