miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24575 3' -57 NC_005264.1 + 32275 1.12 0.001727
Target:  5'- gCCGAGAGCGAGACCUGCGCGUAGCACa -3'
miRNA:   3'- -GGCUCUCGCUCUGGACGCGCAUCGUG- -5'
24575 3' -57 NC_005264.1 + 43069 0.76 0.356168
Target:  5'- gCGGGGG-GAGACCUcucGCGUGUAGCAg -3'
miRNA:   3'- gGCUCUCgCUCUGGA---CGCGCAUCGUg -5'
24575 3' -57 NC_005264.1 + 162096 0.76 0.356168
Target:  5'- gCGGGGG-GAGACCUcucGCGUGUAGCAg -3'
miRNA:   3'- gGCUCUCgCUCUGGA---CGCGCAUCGUg -5'
24575 3' -57 NC_005264.1 + 159589 0.76 0.371957
Target:  5'- aCCGAGaAGCGAGACgaGCGaCGgacauGCGCa -3'
miRNA:   3'- -GGCUC-UCGCUCUGgaCGC-GCau---CGUG- -5'
24575 3' -57 NC_005264.1 + 100066 0.75 0.430845
Target:  5'- -aGGGuuuGCGGGGCCUaGgGCGUAGCAUg -3'
miRNA:   3'- ggCUCu--CGCUCUGGA-CgCGCAUCGUG- -5'
24575 3' -57 NC_005264.1 + 33646 0.74 0.457703
Target:  5'- aCGAGGGCuGGGACCaaGCGgGUGGCGg -3'
miRNA:   3'- gGCUCUCG-CUCUGGa-CGCgCAUCGUg -5'
24575 3' -57 NC_005264.1 + 3664 0.74 0.461351
Target:  5'- gCUGGGGGCGAcuggcauuggugcggGGCCUgGCGCGgaaagGGCGCa -3'
miRNA:   3'- -GGCUCUCGCU---------------CUGGA-CGCGCa----UCGUG- -5'
24575 3' -57 NC_005264.1 + 59992 0.74 0.466853
Target:  5'- gCCGcGAGCGAGACg-GcCGCGUGGcCGCg -3'
miRNA:   3'- -GGCuCUCGCUCUGgaC-GCGCAUC-GUG- -5'
24575 3' -57 NC_005264.1 + 130525 0.74 0.48543
Target:  5'- gCCGGcGAGauAGACCUGCGCGaAGCGu -3'
miRNA:   3'- -GGCU-CUCgcUCUGGACGCGCaUCGUg -5'
24575 3' -57 NC_005264.1 + 53573 0.73 0.523587
Target:  5'- gCGcAGAGCGGcgcGGCUUGCGUuuuGUGGCACa -3'
miRNA:   3'- gGC-UCUCGCU---CUGGACGCG---CAUCGUG- -5'
24575 3' -57 NC_005264.1 + 148287 0.72 0.562837
Target:  5'- gCGGGAGauucugGAGACCgcGCGCGUGcGCGCc -3'
miRNA:   3'- gGCUCUCg-----CUCUGGa-CGCGCAU-CGUG- -5'
24575 3' -57 NC_005264.1 + 16054 0.72 0.572781
Target:  5'- aCGGGAGCGGcuauauGACCUGCgaacacacuGCG-AGCACu -3'
miRNA:   3'- gGCUCUCGCU------CUGGACG---------CGCaUCGUG- -5'
24575 3' -57 NC_005264.1 + 100558 0.72 0.582766
Target:  5'- gCCGAGAucGCGGGACaaggGCGCaaAGCGCc -3'
miRNA:   3'- -GGCUCU--CGCUCUGga--CGCGcaUCGUG- -5'
24575 3' -57 NC_005264.1 + 16520 0.71 0.621975
Target:  5'- gCCGAGAGUcAGgauagcucuuagcGCUUGCGCGUauuucAGCGCg -3'
miRNA:   3'- -GGCUCUCGcUC-------------UGGACGCGCA-----UCGUG- -5'
24575 3' -57 NC_005264.1 + 98765 0.71 0.622984
Target:  5'- gCGAGAGaacccacaggcCGAGACCUGCGCcUacuacuuaaAGCACc -3'
miRNA:   3'- gGCUCUC-----------GCUCUGGACGCGcA---------UCGUG- -5'
24575 3' -57 NC_005264.1 + 101345 0.71 0.633073
Target:  5'- gCGcuAGcCGAGACCgcgggGCGCGUcGGCGCg -3'
miRNA:   3'- gGCucUC-GCUCUGGa----CGCGCA-UCGUG- -5'
24575 3' -57 NC_005264.1 + 51762 0.71 0.643162
Target:  5'- uCUGAGAGCGAGAugcaaucgcCCgGCGCGaacuUGGCGu -3'
miRNA:   3'- -GGCUCUCGCUCU---------GGaCGCGC----AUCGUg -5'
24575 3' -57 NC_005264.1 + 117003 0.71 0.643162
Target:  5'- uUGGGGGCGG--UCUGCGCGgcGCAUg -3'
miRNA:   3'- gGCUCUCGCUcuGGACGCGCauCGUG- -5'
24575 3' -57 NC_005264.1 + 159726 0.71 0.643162
Target:  5'- aCGAGAaacCGAGACCUgcugcGCGCGaUGGCAg -3'
miRNA:   3'- gGCUCUc--GCUCUGGA-----CGCGC-AUCGUg -5'
24575 3' -57 NC_005264.1 + 39485 0.7 0.663306
Target:  5'- gCCGccaGGGGC-AGGCCUGCGCuGUGGUggACg -3'
miRNA:   3'- -GGC---UCUCGcUCUGGACGCG-CAUCG--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.