miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24575 3' -57 NC_005264.1 + 158512 0.7 0.663306
Target:  5'- gCCGccaGGGGC-AGGCCUGCGCuGUGGUggACg -3'
miRNA:   3'- -GGC---UCUCGcUCUGGACGCG-CAUCG--UG- -5'
24575 3' -57 NC_005264.1 + 82624 0.7 0.673345
Target:  5'- uUGGGAG-GGGAUaUGCGCGUGGCGu -3'
miRNA:   3'- gGCUCUCgCUCUGgACGCGCAUCGUg -5'
24575 3' -57 NC_005264.1 + 52883 0.7 0.703234
Target:  5'- gCGcGAGCGAgGGgCUGCGUgGUGGCAUg -3'
miRNA:   3'- gGCuCUCGCU-CUgGACGCG-CAUCGUG- -5'
24575 3' -57 NC_005264.1 + 98098 0.7 0.703234
Target:  5'- --cAGGGCGAucCUUGCGCGgGGCACg -3'
miRNA:   3'- ggcUCUCGCUcuGGACGCGCaUCGUG- -5'
24575 3' -57 NC_005264.1 + 80502 0.7 0.703234
Target:  5'- gCCGAGAGCGAGaacaucGCC-GCG-GU-GCGCa -3'
miRNA:   3'- -GGCUCUCGCUC------UGGaCGCgCAuCGUG- -5'
24575 3' -57 NC_005264.1 + 72493 0.7 0.713091
Target:  5'- gCGucGGCGGGuugaagaucugcGCCgagagGCGCGUGGCGCu -3'
miRNA:   3'- gGCucUCGCUC------------UGGa----CGCGCAUCGUG- -5'
24575 3' -57 NC_005264.1 + 129544 0.7 0.717016
Target:  5'- cUCGccGAGCGGGuCCUGUGCGgcgccgcccucaggGGCGCg -3'
miRNA:   3'- -GGCu-CUCGCUCuGGACGCGCa-------------UCGUG- -5'
24575 3' -57 NC_005264.1 + 10517 0.7 0.717016
Target:  5'- cUCGccGAGCGGGuCCUGUGCGgcgccgcccucaggGGCGCg -3'
miRNA:   3'- -GGCu-CUCGCUCuGGACGCGCa-------------UCGUG- -5'
24575 3' -57 NC_005264.1 + 86891 0.69 0.722882
Target:  5'- uCCGguAGAGCG-GACUU-UGCGUGGCAUa -3'
miRNA:   3'- -GGC--UCUCGCuCUGGAcGCGCAUCGUG- -5'
24575 3' -57 NC_005264.1 + 103812 0.69 0.740308
Target:  5'- gCGGGAccGCGGGGCUUGCGCucgauucgcugAGCGCc -3'
miRNA:   3'- gGCUCU--CGCUCUGGACGCGca---------UCGUG- -5'
24575 3' -57 NC_005264.1 + 150487 0.69 0.742227
Target:  5'- aCGAGAGCGucGCCgauggGCGUGgaUGGUGCg -3'
miRNA:   3'- gGCUCUCGCucUGGa----CGCGC--AUCGUG- -5'
24575 3' -57 NC_005264.1 + 31460 0.69 0.742227
Target:  5'- aCGAGAGCGucGCCgauggGCGUGgaUGGUGCg -3'
miRNA:   3'- gGCUCUCGCucUGGa----CGCGC--AUCGUG- -5'
24575 3' -57 NC_005264.1 + 71643 0.69 0.751764
Target:  5'- gCCcAGuGCGcGaACCUGUGCGUGGCGu -3'
miRNA:   3'- -GGcUCuCGCuC-UGGACGCGCAUCGUg -5'
24575 3' -57 NC_005264.1 + 52446 0.69 0.751764
Target:  5'- cUCGAGccuGcCGAcGCCgUGCGCGUAGCAg -3'
miRNA:   3'- -GGCUCu--C-GCUcUGG-ACGCGCAUCGUg -5'
24575 3' -57 NC_005264.1 + 125529 0.69 0.751764
Target:  5'- gUCGAGAgaagGCGGGugUUGCuGCGgcugcGGCGCa -3'
miRNA:   3'- -GGCUCU----CGCUCugGACG-CGCa----UCGUG- -5'
24575 3' -57 NC_005264.1 + 125163 0.69 0.761198
Target:  5'- -gGAGGGCGAGGgCcGCGCGcccgucGCGCa -3'
miRNA:   3'- ggCUCUCGCUCUgGaCGCGCau----CGUG- -5'
24575 3' -57 NC_005264.1 + 6136 0.69 0.761198
Target:  5'- -gGAGGGCGAGGgCcGCGCGcccgucGCGCa -3'
miRNA:   3'- ggCUCUCGCUCUgGaCGCGCau----CGUG- -5'
24575 3' -57 NC_005264.1 + 75153 0.69 0.761198
Target:  5'- aCGAGGGCcacgccAGAgUUGUGCaGUAGCGCg -3'
miRNA:   3'- gGCUCUCGc-----UCUgGACGCG-CAUCGUG- -5'
24575 3' -57 NC_005264.1 + 3742 0.68 0.770522
Target:  5'- aCGAgGAGCGGGGCCucuUGCcGCcggGGCGCu -3'
miRNA:   3'- gGCU-CUCGCUCUGG---ACG-CGca-UCGUG- -5'
24575 3' -57 NC_005264.1 + 45408 0.68 0.770522
Target:  5'- -gGAGGGCGGcGcCCUGCGCGccGCGa -3'
miRNA:   3'- ggCUCUCGCU-CuGGACGCGCauCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.