Results 21 - 40 of 82 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24575 | 3' | -57 | NC_005264.1 | + | 16377 | 0.67 | 0.848032 |
Target: 5'- gCUGGGGGgGAGGggaUGCcCGUGGCGCa -3' miRNA: 3'- -GGCUCUCgCUCUgg-ACGcGCAUCGUG- -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 133078 | 0.67 | 0.848032 |
Target: 5'- gCCGcGAGCGAG-CUgugGUGCGagcuGCACg -3' miRNA: 3'- -GGCuCUCGCUCuGGa--CGCGCau--CGUG- -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 39573 | 0.67 | 0.848032 |
Target: 5'- gCCGGGAcUGAucuACCUuCGCGUGGCGCc -3' miRNA: 3'- -GGCUCUcGCUc--UGGAcGCGCAUCGUG- -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 16743 | 0.67 | 0.840084 |
Target: 5'- cCCGAauGCGuaguccaccaAGACCcGCGCGggGGCGCg -3' miRNA: 3'- -GGCUcuCGC----------UCUGGaCGCGCa-UCGUG- -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 115592 | 0.67 | 0.840084 |
Target: 5'- uCCGgaGGAGUGGGGCCUGCucuGCGccaagAGCu- -3' miRNA: 3'- -GGC--UCUCGCUCUGGACG---CGCa----UCGug -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 49810 | 0.67 | 0.835227 |
Target: 5'- gUCGAGGuGCaGGGCCgcguauucuuuuuugUGCGCG-AGCACg -3' miRNA: 3'- -GGCUCU-CGcUCUGG---------------ACGCGCaUCGUG- -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 156147 | 0.67 | 0.831953 |
Target: 5'- aCGAGGGCGAGgcggccgucucgGCCUcGCuGC-UGGCGCc -3' miRNA: 3'- gGCUCUCGCUC------------UGGA-CG-CGcAUCGUG- -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 37120 | 0.67 | 0.831953 |
Target: 5'- aCGAGGGCGAGgcggccgucucgGCCUcGCuGC-UGGCGCc -3' miRNA: 3'- gGCUCUCGCUC------------UGGA-CG-CGcAUCGUG- -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 59768 | 0.67 | 0.824484 |
Target: 5'- aCGcGGAcgcuucGCGGGACUcgucgcccgcaggggGCGCGUAGCGCa -3' miRNA: 3'- gGC-UCU------CGCUCUGGa--------------CGCGCAUCGUG- -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 18548 | 0.67 | 0.823645 |
Target: 5'- gCCGGGAGaCGu-ACCccuguuUGCGCGcGGCACg -3' miRNA: 3'- -GGCUCUC-GCucUGG------ACGCGCaUCGUG- -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 112612 | 0.68 | 0.815168 |
Target: 5'- aCUGGGAGCGGGGCCcGC-CGgu-CACg -3' miRNA: 3'- -GGCUCUCGCUCUGGaCGcGCaucGUG- -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 115922 | 0.68 | 0.797738 |
Target: 5'- aCGAGcGGCGAGACCauaUGCGCGg----- -3' miRNA: 3'- gGCUC-UCGCUCUGG---ACGCGCaucgug -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 53791 | 0.68 | 0.797738 |
Target: 5'- gUGGGAGCGGGAgCUGCuccGCGUGuuuaagauGCAUc -3' miRNA: 3'- gGCUCUCGCUCUgGACG---CGCAU--------CGUG- -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 40794 | 0.68 | 0.797738 |
Target: 5'- gCCGAGAGCgGAGccGCUUGCcGCGgGGuCGCc -3' miRNA: 3'- -GGCUCUCG-CUC--UGGACG-CGCaUC-GUG- -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 87650 | 0.68 | 0.797738 |
Target: 5'- gUGGGGcGCGGGACCUG-GCGgcaacgGGCAg -3' miRNA: 3'- gGCUCU-CGCUCUGGACgCGCa-----UCGUg -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 3470 | 0.68 | 0.7888 |
Target: 5'- cUCGGGGGCGAugGGCUUGC-CGccGCACg -3' miRNA: 3'- -GGCUCUCGCU--CUGGACGcGCauCGUG- -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 122497 | 0.68 | 0.7888 |
Target: 5'- cUCGGGGGCGAugGGCUUGC-CGccGCACg -3' miRNA: 3'- -GGCUCUCGCU--CUGGACGcGCauCGUG- -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 48791 | 0.68 | 0.779725 |
Target: 5'- gCCGgcGGGGCGAacGACCU-CGCGUuucccacagcggAGCGCa -3' miRNA: 3'- -GGC--UCUCGCU--CUGGAcGCGCA------------UCGUG- -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 4070 | 0.68 | 0.779725 |
Target: 5'- cCCGAcAGCGGGGCUguugcacggGCGgCGUcgcGGCACg -3' miRNA: 3'- -GGCUcUCGCUCUGGa--------CGC-GCA---UCGUG- -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 123097 | 0.68 | 0.779725 |
Target: 5'- cCCGAcAGCGGGGCUguugcacggGCGgCGUcgcGGCACg -3' miRNA: 3'- -GGCUcUCGCUCUGGa--------CGC-GCA---UCGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home