Results 41 - 60 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24575 | 3' | -57 | NC_005264.1 | + | 131702 | 0.68 | 0.77881 |
Target: 5'- gCGu-AGCGuGGGCCUGCGCGgcguugcUGGCGCu -3' miRNA: 3'- gGCucUCGC-UCUGGACGCGC-------AUCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 122768 | 0.68 | 0.770522 |
Target: 5'- aCGAgGAGCGGGGCCucuUGCcGCcggGGCGCu -3' miRNA: 3'- gGCU-CUCGCUCUGG---ACG-CGca-UCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 3742 | 0.68 | 0.770522 |
Target: 5'- aCGAgGAGCGGGGCCucuUGCcGCcggGGCGCu -3' miRNA: 3'- gGCU-CUCGCUCUGG---ACG-CGca-UCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 45408 | 0.68 | 0.770522 |
Target: 5'- -gGAGGGCGGcGcCCUGCGCGccGCGa -3' miRNA: 3'- ggCUCUCGCU-CuGGACGCGCauCGUg -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 75153 | 0.69 | 0.761198 |
Target: 5'- aCGAGGGCcacgccAGAgUUGUGCaGUAGCGCg -3' miRNA: 3'- gGCUCUCGc-----UCUgGACGCG-CAUCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 6136 | 0.69 | 0.761198 |
Target: 5'- -gGAGGGCGAGGgCcGCGCGcccgucGCGCa -3' miRNA: 3'- ggCUCUCGCUCUgGaCGCGCau----CGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 125163 | 0.69 | 0.761198 |
Target: 5'- -gGAGGGCGAGGgCcGCGCGcccgucGCGCa -3' miRNA: 3'- ggCUCUCGCUCUgGaCGCGCau----CGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 52446 | 0.69 | 0.751764 |
Target: 5'- cUCGAGccuGcCGAcGCCgUGCGCGUAGCAg -3' miRNA: 3'- -GGCUCu--C-GCUcUGG-ACGCGCAUCGUg -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 125529 | 0.69 | 0.751764 |
Target: 5'- gUCGAGAgaagGCGGGugUUGCuGCGgcugcGGCGCa -3' miRNA: 3'- -GGCUCU----CGCUCugGACG-CGCa----UCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 71643 | 0.69 | 0.751764 |
Target: 5'- gCCcAGuGCGcGaACCUGUGCGUGGCGu -3' miRNA: 3'- -GGcUCuCGCuC-UGGACGCGCAUCGUg -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 31460 | 0.69 | 0.742227 |
Target: 5'- aCGAGAGCGucGCCgauggGCGUGgaUGGUGCg -3' miRNA: 3'- gGCUCUCGCucUGGa----CGCGC--AUCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 150487 | 0.69 | 0.742227 |
Target: 5'- aCGAGAGCGucGCCgauggGCGUGgaUGGUGCg -3' miRNA: 3'- gGCUCUCGCucUGGa----CGCGC--AUCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 103812 | 0.69 | 0.740308 |
Target: 5'- gCGGGAccGCGGGGCUUGCGCucgauucgcugAGCGCc -3' miRNA: 3'- gGCUCU--CGCUCUGGACGCGca---------UCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 86891 | 0.69 | 0.722882 |
Target: 5'- uCCGguAGAGCG-GACUU-UGCGUGGCAUa -3' miRNA: 3'- -GGC--UCUCGCuCUGGAcGCGCAUCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 129544 | 0.7 | 0.717016 |
Target: 5'- cUCGccGAGCGGGuCCUGUGCGgcgccgcccucaggGGCGCg -3' miRNA: 3'- -GGCu-CUCGCUCuGGACGCGCa-------------UCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 10517 | 0.7 | 0.717016 |
Target: 5'- cUCGccGAGCGGGuCCUGUGCGgcgccgcccucaggGGCGCg -3' miRNA: 3'- -GGCu-CUCGCUCuGGACGCGCa-------------UCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 72493 | 0.7 | 0.713091 |
Target: 5'- gCGucGGCGGGuugaagaucugcGCCgagagGCGCGUGGCGCu -3' miRNA: 3'- gGCucUCGCUC------------UGGa----CGCGCAUCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 80502 | 0.7 | 0.703234 |
Target: 5'- gCCGAGAGCGAGaacaucGCC-GCG-GU-GCGCa -3' miRNA: 3'- -GGCUCUCGCUC------UGGaCGCgCAuCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 98098 | 0.7 | 0.703234 |
Target: 5'- --cAGGGCGAucCUUGCGCGgGGCACg -3' miRNA: 3'- ggcUCUCGCUcuGGACGCGCaUCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 52883 | 0.7 | 0.703234 |
Target: 5'- gCGcGAGCGAgGGgCUGCGUgGUGGCAUg -3' miRNA: 3'- gGCuCUCGCU-CUgGACGCG-CAUCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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