miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24575 3' -57 NC_005264.1 + 16377 0.67 0.848032
Target:  5'- gCUGGGGGgGAGGggaUGCcCGUGGCGCa -3'
miRNA:   3'- -GGCUCUCgCUCUgg-ACGcGCAUCGUG- -5'
24575 3' -57 NC_005264.1 + 158600 0.67 0.848032
Target:  5'- gCCGGGAcUGAucuACCUuCGCGUGGCGCc -3'
miRNA:   3'- -GGCUCUcGCUc--UGGAcGCGCAUCGUG- -5'
24575 3' -57 NC_005264.1 + 59768 0.67 0.824484
Target:  5'- aCGcGGAcgcuucGCGGGACUcgucgcccgcaggggGCGCGUAGCGCa -3'
miRNA:   3'- gGC-UCU------CGCUCUGGa--------------CGCGCAUCGUG- -5'
24575 3' -57 NC_005264.1 + 115592 0.67 0.840084
Target:  5'- uCCGgaGGAGUGGGGCCUGCucuGCGccaagAGCu- -3'
miRNA:   3'- -GGC--UCUCGCUCUGGACG---CGCa----UCGug -5'
24575 3' -57 NC_005264.1 + 18548 0.67 0.823645
Target:  5'- gCCGGGAGaCGu-ACCccuguuUGCGCGcGGCACg -3'
miRNA:   3'- -GGCUCUC-GCucUGG------ACGCGCaUCGUG- -5'
24575 3' -57 NC_005264.1 + 39573 0.67 0.848032
Target:  5'- gCCGGGAcUGAucuACCUuCGCGUGGCGCc -3'
miRNA:   3'- -GGCUCUcGCUc--UGGAcGCGCAUCGUG- -5'
24575 3' -57 NC_005264.1 + 47600 0.67 0.863349
Target:  5'- gCGuuGGGgGAGACUcGCGCGaacGGCGCg -3'
miRNA:   3'- gGCu-CUCgCUCUGGaCGCGCa--UCGUG- -5'
24575 3' -57 NC_005264.1 + 16743 0.67 0.840084
Target:  5'- cCCGAauGCGuaguccaccaAGACCcGCGCGggGGCGCg -3'
miRNA:   3'- -GGCUcuCGC----------UCUGGaCGCGCa-UCGUG- -5'
24575 3' -57 NC_005264.1 + 153911 0.67 0.863349
Target:  5'- gCCGAGAaacuguuccGCGAGuACCUgaagacGCGCGUcuccAGCGa -3'
miRNA:   3'- -GGCUCU---------CGCUC-UGGA------CGCGCA----UCGUg -5'
24575 3' -57 NC_005264.1 + 37120 0.67 0.831953
Target:  5'- aCGAGGGCGAGgcggccgucucgGCCUcGCuGC-UGGCGCc -3'
miRNA:   3'- gGCUCUCGCUC------------UGGA-CG-CGcAUCGUG- -5'
24575 3' -57 NC_005264.1 + 123097 0.68 0.779725
Target:  5'- cCCGAcAGCGGGGCUguugcacggGCGgCGUcgcGGCACg -3'
miRNA:   3'- -GGCUcUCGCUCUGGa--------CGC-GCA---UCGUG- -5'
24575 3' -57 NC_005264.1 + 122497 0.68 0.7888
Target:  5'- cUCGGGGGCGAugGGCUUGC-CGccGCACg -3'
miRNA:   3'- -GGCUCUCGCU--CUGGACGcGCauCGUG- -5'
24575 3' -57 NC_005264.1 + 112612 0.68 0.815168
Target:  5'- aCUGGGAGCGGGGCCcGC-CGgu-CACg -3'
miRNA:   3'- -GGCUCUCGCUCUGGaCGcGCaucGUG- -5'
24575 3' -57 NC_005264.1 + 131702 0.68 0.77881
Target:  5'- gCGu-AGCGuGGGCCUGCGCGgcguugcUGGCGCu -3'
miRNA:   3'- gGCucUCGC-UCUGGACGCGC-------AUCGUG- -5'
24575 3' -57 NC_005264.1 + 115922 0.68 0.797738
Target:  5'- aCGAGcGGCGAGACCauaUGCGCGg----- -3'
miRNA:   3'- gGCUC-UCGCUCUGG---ACGCGCaucgug -5'
24575 3' -57 NC_005264.1 + 53791 0.68 0.797738
Target:  5'- gUGGGAGCGGGAgCUGCuccGCGUGuuuaagauGCAUc -3'
miRNA:   3'- gGCUCUCGCUCUgGACG---CGCAU--------CGUG- -5'
24575 3' -57 NC_005264.1 + 4070 0.68 0.779725
Target:  5'- cCCGAcAGCGGGGCUguugcacggGCGgCGUcgcGGCACg -3'
miRNA:   3'- -GGCUcUCGCUCUGGa--------CGC-GCA---UCGUG- -5'
24575 3' -57 NC_005264.1 + 3470 0.68 0.7888
Target:  5'- cUCGGGGGCGAugGGCUUGC-CGccGCACg -3'
miRNA:   3'- -GGCUCUCGCU--CUGGACGcGCauCGUG- -5'
24575 3' -57 NC_005264.1 + 45408 0.68 0.770522
Target:  5'- -gGAGGGCGGcGcCCUGCGCGccGCGa -3'
miRNA:   3'- ggCUCUCGCU-CuGGACGCGCauCGUg -5'
24575 3' -57 NC_005264.1 + 3742 0.68 0.770522
Target:  5'- aCGAgGAGCGGGGCCucuUGCcGCcggGGCGCu -3'
miRNA:   3'- gGCU-CUCGCUCUGG---ACG-CGca-UCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.