miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24575 3' -57 NC_005264.1 + 51762 0.71 0.643162
Target:  5'- uCUGAGAGCGAGAugcaaucgcCCgGCGCGaacuUGGCGu -3'
miRNA:   3'- -GGCUCUCGCUCU---------GGaCGCGC----AUCGUg -5'
24575 3' -57 NC_005264.1 + 59992 0.74 0.466853
Target:  5'- gCCGcGAGCGAGACg-GcCGCGUGGcCGCg -3'
miRNA:   3'- -GGCuCUCGCUCUGgaC-GCGCAUC-GUG- -5'
24575 3' -57 NC_005264.1 + 27436 0.66 0.89801
Target:  5'- aUGAGgcuuucAGCcAGACCUGCGCcgagcGGCGCa -3'
miRNA:   3'- gGCUC------UCGcUCUGGACGCGca---UCGUG- -5'
24575 3' -57 NC_005264.1 + 158600 0.67 0.848032
Target:  5'- gCCGGGAcUGAucuACCUuCGCGUGGCGCc -3'
miRNA:   3'- -GGCUCUcGCUc--UGGAcGCGCAUCGUG- -5'
24575 3' -57 NC_005264.1 + 48791 0.68 0.779725
Target:  5'- gCCGgcGGGGCGAacGACCU-CGCGUuucccacagcggAGCGCa -3'
miRNA:   3'- -GGC--UCUCGCU--CUGGAcGCGCA------------UCGUG- -5'
24575 3' -57 NC_005264.1 + 3664 0.74 0.461351
Target:  5'- gCUGGGGGCGAcuggcauuggugcggGGCCUgGCGCGgaaagGGCGCa -3'
miRNA:   3'- -GGCUCUCGCU---------------CUGGA-CGCGCa----UCGUG- -5'
24575 3' -57 NC_005264.1 + 133078 0.67 0.848032
Target:  5'- gCCGcGAGCGAG-CUgugGUGCGagcuGCACg -3'
miRNA:   3'- -GGCuCUCGCUCuGGa--CGCGCau--CGUG- -5'
24575 3' -57 NC_005264.1 + 162096 0.76 0.356168
Target:  5'- gCGGGGG-GAGACCUcucGCGUGUAGCAg -3'
miRNA:   3'- gGCUCUCgCUCUGGA---CGCGCAUCGUg -5'
24575 3' -57 NC_005264.1 + 32275 1.12 0.001727
Target:  5'- gCCGAGAGCGAGACCUGCGCGUAGCACa -3'
miRNA:   3'- -GGCUCUCGCUCUGGACGCGCAUCGUG- -5'
24575 3' -57 NC_005264.1 + 123097 0.68 0.779725
Target:  5'- cCCGAcAGCGGGGCUguugcacggGCGgCGUcgcGGCACg -3'
miRNA:   3'- -GGCUcUCGCUCUGGa--------CGC-GCA---UCGUG- -5'
24575 3' -57 NC_005264.1 + 152673 0.66 0.884793
Target:  5'- aCGAGGGCuGGGACCaaGCGgGggcgGGUAUg -3'
miRNA:   3'- gGCUCUCG-CUCUGGa-CGCgCa---UCGUG- -5'
24575 3' -57 NC_005264.1 + 100558 0.72 0.582766
Target:  5'- gCCGAGAucGCGGGACaaggGCGCaaAGCGCc -3'
miRNA:   3'- -GGCUCU--CGCUCUGga--CGCGcaUCGUG- -5'
24575 3' -57 NC_005264.1 + 53573 0.73 0.523587
Target:  5'- gCGcAGAGCGGcgcGGCUUGCGUuuuGUGGCACa -3'
miRNA:   3'- gGC-UCUCGCU---CUGGACGCG---CAUCGUG- -5'
24575 3' -57 NC_005264.1 + 49810 0.67 0.835227
Target:  5'- gUCGAGGuGCaGGGCCgcguauucuuuuuugUGCGCG-AGCACg -3'
miRNA:   3'- -GGCUCU-CGcUCUGG---------------ACGCGCaUCGUG- -5'
24575 3' -57 NC_005264.1 + 52100 0.66 0.870707
Target:  5'- uUGAGGGCGAcgucaGACauaGCGCGUgAGUGCg -3'
miRNA:   3'- gGCUCUCGCU-----CUGga-CGCGCA-UCGUG- -5'
24575 3' -57 NC_005264.1 + 37120 0.67 0.831953
Target:  5'- aCGAGGGCGAGgcggccgucucgGCCUcGCuGC-UGGCGCc -3'
miRNA:   3'- gGCUCUCGCUC------------UGGA-CG-CGcAUCGUG- -5'
24575 3' -57 NC_005264.1 + 115592 0.67 0.840084
Target:  5'- uCCGgaGGAGUGGGGCCUGCucuGCGccaagAGCu- -3'
miRNA:   3'- -GGC--UCUCGCUCUGGACG---CGCa----UCGug -5'
24575 3' -57 NC_005264.1 + 71643 0.69 0.751764
Target:  5'- gCCcAGuGCGcGaACCUGUGCGUGGCGu -3'
miRNA:   3'- -GGcUCuCGCuC-UGGACGCGCAUCGUg -5'
24575 3' -57 NC_005264.1 + 125529 0.69 0.751764
Target:  5'- gUCGAGAgaagGCGGGugUUGCuGCGgcugcGGCGCa -3'
miRNA:   3'- -GGCUCU----CGCUCugGACG-CGCa----UCGUG- -5'
24575 3' -57 NC_005264.1 + 52446 0.69 0.751764
Target:  5'- cUCGAGccuGcCGAcGCCgUGCGCGUAGCAg -3'
miRNA:   3'- -GGCUCu--C-GCUcUGG-ACGCGCAUCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.