Results 1 - 20 of 82 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24575 | 3' | -57 | NC_005264.1 | + | 32275 | 1.12 | 0.001727 |
Target: 5'- gCCGAGAGCGAGACCUGCGCGUAGCACa -3' miRNA: 3'- -GGCUCUCGCUCUGGACGCGCAUCGUG- -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 48791 | 0.68 | 0.779725 |
Target: 5'- gCCGgcGGGGCGAacGACCU-CGCGUuucccacagcggAGCGCa -3' miRNA: 3'- -GGC--UCUCGCU--CUGGAcGCGCA------------UCGUG- -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 122497 | 0.68 | 0.7888 |
Target: 5'- cUCGGGGGCGAugGGCUUGC-CGccGCACg -3' miRNA: 3'- -GGCUCUCGCU--CUGGACGcGCauCGUG- -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 27436 | 0.66 | 0.89801 |
Target: 5'- aUGAGgcuuucAGCcAGACCUGCGCcgagcGGCGCa -3' miRNA: 3'- gGCUC------UCGcUCUGGACGCGca---UCGUG- -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 53573 | 0.73 | 0.523587 |
Target: 5'- gCGcAGAGCGGcgcGGCUUGCGUuuuGUGGCACa -3' miRNA: 3'- gGC-UCUCGCU---CUGGACGCG---CAUCGUG- -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 148287 | 0.72 | 0.562837 |
Target: 5'- gCGGGAGauucugGAGACCgcGCGCGUGcGCGCc -3' miRNA: 3'- gGCUCUCg-----CUCUGGa-CGCGCAU-CGUG- -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 100558 | 0.72 | 0.582766 |
Target: 5'- gCCGAGAucGCGGGACaaggGCGCaaAGCGCc -3' miRNA: 3'- -GGCUCU--CGCUCUGga--CGCGcaUCGUG- -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 16520 | 0.71 | 0.621975 |
Target: 5'- gCCGAGAGUcAGgauagcucuuagcGCUUGCGCGUauuucAGCGCg -3' miRNA: 3'- -GGCUCUCGcUC-------------UGGACGCGCA-----UCGUG- -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 117003 | 0.71 | 0.643162 |
Target: 5'- uUGGGGGCGG--UCUGCGCGgcGCAUg -3' miRNA: 3'- gGCUCUCGCUcuGGACGCGCauCGUG- -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 122768 | 0.68 | 0.770522 |
Target: 5'- aCGAgGAGCGGGGCCucuUGCcGCcggGGCGCu -3' miRNA: 3'- gGCU-CUCGCUCUGG---ACG-CGca-UCGUG- -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 129544 | 0.7 | 0.717016 |
Target: 5'- cUCGccGAGCGGGuCCUGUGCGgcgccgcccucaggGGCGCg -3' miRNA: 3'- -GGCu-CUCGCUCuGGACGCGCa-------------UCGUG- -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 51762 | 0.71 | 0.643162 |
Target: 5'- uCUGAGAGCGAGAugcaaucgcCCgGCGCGaacuUGGCGu -3' miRNA: 3'- -GGCUCUCGCUCU---------GGaCGCGC----AUCGUg -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 162096 | 0.76 | 0.356168 |
Target: 5'- gCGGGGG-GAGACCUcucGCGUGUAGCAg -3' miRNA: 3'- gGCUCUCgCUCUGGA---CGCGCAUCGUg -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 150487 | 0.69 | 0.742227 |
Target: 5'- aCGAGAGCGucGCCgauggGCGUGgaUGGUGCg -3' miRNA: 3'- gGCUCUCGCucUGGa----CGCGC--AUCGUG- -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 3664 | 0.74 | 0.461351 |
Target: 5'- gCUGGGGGCGAcuggcauuggugcggGGCCUgGCGCGgaaagGGCGCa -3' miRNA: 3'- -GGCUCUCGCU---------------CUGGA-CGCGCa----UCGUG- -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 98765 | 0.71 | 0.622984 |
Target: 5'- gCGAGAGaacccacaggcCGAGACCUGCGCcUacuacuuaaAGCACc -3' miRNA: 3'- gGCUCUC-----------GCUCUGGACGCGcA---------UCGUG- -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 125163 | 0.69 | 0.761198 |
Target: 5'- -gGAGGGCGAGGgCcGCGCGcccgucGCGCa -3' miRNA: 3'- ggCUCUCGCUCUgGaCGCGCau----CGUG- -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 123097 | 0.68 | 0.779725 |
Target: 5'- cCCGAcAGCGGGGCUguugcacggGCGgCGUcgcGGCACg -3' miRNA: 3'- -GGCUcUCGCUCUGGa--------CGC-GCA---UCGUG- -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 59992 | 0.74 | 0.466853 |
Target: 5'- gCCGcGAGCGAGACg-GcCGCGUGGcCGCg -3' miRNA: 3'- -GGCuCUCGCUCUGgaC-GCGCAUC-GUG- -5' |
|||||||
24575 | 3' | -57 | NC_005264.1 | + | 16054 | 0.72 | 0.572781 |
Target: 5'- aCGGGAGCGGcuauauGACCUGCgaacacacuGCG-AGCACu -3' miRNA: 3'- gGCUCUCGCU------CUGGACG---------CGCaUCGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home