Results 1 - 20 of 82 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24575 | 3' | -57 | NC_005264.1 | + | 3470 | 0.68 | 0.7888 |
Target: 5'- cUCGGGGGCGAugGGCUUGC-CGccGCACg -3' miRNA: 3'- -GGCUCUCGCU--CUGGACGcGCauCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 39573 | 0.67 | 0.848032 |
Target: 5'- gCCGGGAcUGAucuACCUuCGCGUGGCGCc -3' miRNA: 3'- -GGCUCUcGCUc--UGGAcGCGCAUCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 115592 | 0.67 | 0.840084 |
Target: 5'- uCCGgaGGAGUGGGGCCUGCucuGCGccaagAGCu- -3' miRNA: 3'- -GGC--UCUCGCUCUGGACG---CGCa----UCGug -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 37120 | 0.67 | 0.831953 |
Target: 5'- aCGAGGGCGAGgcggccgucucgGCCUcGCuGC-UGGCGCc -3' miRNA: 3'- gGCUCUCGCUC------------UGGA-CG-CGcAUCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 59768 | 0.67 | 0.824484 |
Target: 5'- aCGcGGAcgcuucGCGGGACUcgucgcccgcaggggGCGCGUAGCGCa -3' miRNA: 3'- gGC-UCU------CGCUCUGGa--------------CGCGCAUCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 18548 | 0.67 | 0.823645 |
Target: 5'- gCCGGGAGaCGu-ACCccuguuUGCGCGcGGCACg -3' miRNA: 3'- -GGCUCUC-GCucUGG------ACGCGCaUCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 115922 | 0.68 | 0.797738 |
Target: 5'- aCGAGcGGCGAGACCauaUGCGCGg----- -3' miRNA: 3'- gGCUC-UCGCUCUGG---ACGCGCaucgug -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 87650 | 0.68 | 0.797738 |
Target: 5'- gUGGGGcGCGGGACCUG-GCGgcaacgGGCAg -3' miRNA: 3'- gGCUCU-CGCUCUGGACgCGCa-----UCGUg -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 53791 | 0.68 | 0.797738 |
Target: 5'- gUGGGAGCGGGAgCUGCuccGCGUGuuuaagauGCAUc -3' miRNA: 3'- gGCUCUCGCUCUgGACG---CGCAU--------CGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 47600 | 0.67 | 0.863349 |
Target: 5'- gCGuuGGGgGAGACUcGCGCGaacGGCGCg -3' miRNA: 3'- gGCu-CUCgCUCUGGaCGCGCa--UCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 153911 | 0.67 | 0.863349 |
Target: 5'- gCCGAGAaacuguuccGCGAGuACCUgaagacGCGCGUcuccAGCGa -3' miRNA: 3'- -GGCUCU---------CGCUC-UGGA------CGCGCA----UCGUg -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 88664 | 0.66 | 0.870707 |
Target: 5'- gCGAGAGCcAGucaauCUUGCGCcGUauGGCACc -3' miRNA: 3'- gGCUCUCGcUCu----GGACGCG-CA--UCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 67630 | 0.66 | 0.896084 |
Target: 5'- aCGcGGGCGcAGGgguguCCUGCGCGgcccgucuucguuaUGGCACg -3' miRNA: 3'- gGCuCUCGC-UCU-----GGACGCGC--------------AUCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 30620 | 0.66 | 0.891512 |
Target: 5'- gCGGcGGCGAcgGAUCcGCGCGcAGCGCg -3' miRNA: 3'- gGCUcUCGCU--CUGGaCGCGCaUCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 97717 | 0.66 | 0.891512 |
Target: 5'- aCCGAGGGCuuGGCgU-CGCGUucaccggaggccGGCACg -3' miRNA: 3'- -GGCUCUCGcuCUGgAcGCGCA------------UCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 75194 | 0.66 | 0.880657 |
Target: 5'- gUCGGGGGCGAGAUugUUGaCGUGcagaggguuugccucUGGCGCg -3' miRNA: 3'- -GGCUCUCGCUCUG--GAC-GCGC---------------AUCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 16472 | 0.66 | 0.877151 |
Target: 5'- uCCGAcGAcgcagccGCGGuGGCCUGCGgGgucgaGGCACg -3' miRNA: 3'- -GGCU-CU-------CGCU-CUGGACGCgCa----UCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 102197 | 0.66 | 0.875734 |
Target: 5'- aCGAGcaGGCGGGGaucaagcugcugcuCCUGCGCG-AGC-Cg -3' miRNA: 3'- gGCUC--UCGCUCU--------------GGACGCGCaUCGuG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 56897 | 0.66 | 0.870707 |
Target: 5'- aCCGGGAacuggGCGAGcauuauggggcgGCgUacGUGCGUGGCGCa -3' miRNA: 3'- -GGCUCU-----CGCUC------------UGgA--CGCGCAUCGUG- -5' |
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24575 | 3' | -57 | NC_005264.1 | + | 38829 | 0.66 | 0.870707 |
Target: 5'- aCGAGAaCGAcGACgaUGCGCG-GGCACc -3' miRNA: 3'- gGCUCUcGCU-CUGg-ACGCGCaUCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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