miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24575 3' -57 NC_005264.1 + 162096 0.76 0.356168
Target:  5'- gCGGGGG-GAGACCUcucGCGUGUAGCAg -3'
miRNA:   3'- gGCUCUCgCUCUGGA---CGCGCAUCGUg -5'
24575 3' -57 NC_005264.1 + 159726 0.71 0.643162
Target:  5'- aCGAGAaacCGAGACCUgcugcGCGCGaUGGCAg -3'
miRNA:   3'- gGCUCUc--GCUCUGGA-----CGCGC-AUCGUg -5'
24575 3' -57 NC_005264.1 + 159589 0.76 0.371957
Target:  5'- aCCGAGaAGCGAGACgaGCGaCGgacauGCGCa -3'
miRNA:   3'- -GGCUC-UCGCUCUGgaCGC-GCau---CGUG- -5'
24575 3' -57 NC_005264.1 + 158600 0.67 0.848032
Target:  5'- gCCGGGAcUGAucuACCUuCGCGUGGCGCc -3'
miRNA:   3'- -GGCUCUcGCUc--UGGAcGCGCAUCGUG- -5'
24575 3' -57 NC_005264.1 + 158512 0.7 0.663306
Target:  5'- gCCGccaGGGGC-AGGCCUGCGCuGUGGUggACg -3'
miRNA:   3'- -GGC---UCUCGcUCUGGACGCG-CAUCG--UG- -5'
24575 3' -57 NC_005264.1 + 157855 0.66 0.870707
Target:  5'- aCGAGAaCGAcGACgaUGCGCG-GGCACc -3'
miRNA:   3'- gGCUCUcGCU-CUGg-ACGCGCaUCGUG- -5'
24575 3' -57 NC_005264.1 + 156147 0.67 0.831953
Target:  5'- aCGAGGGCGAGgcggccgucucgGCCUcGCuGC-UGGCGCc -3'
miRNA:   3'- gGCUCUCGCUC------------UGGA-CG-CGcAUCGUG- -5'
24575 3' -57 NC_005264.1 + 153911 0.67 0.863349
Target:  5'- gCCGAGAaacuguuccGCGAGuACCUgaagacGCGCGUcuccAGCGa -3'
miRNA:   3'- -GGCUCU---------CGCUC-UGGA------CGCGCA----UCGUg -5'
24575 3' -57 NC_005264.1 + 152673 0.66 0.884793
Target:  5'- aCGAGGGCuGGGACCaaGCGgGggcgGGUAUg -3'
miRNA:   3'- gGCUCUCG-CUCUGGa-CGCgCa---UCGUG- -5'
24575 3' -57 NC_005264.1 + 150487 0.69 0.742227
Target:  5'- aCGAGAGCGucGCCgauggGCGUGgaUGGUGCg -3'
miRNA:   3'- gGCUCUCGCucUGGa----CGCGC--AUCGUG- -5'
24575 3' -57 NC_005264.1 + 149647 0.66 0.891512
Target:  5'- gCGGcGGCGAcgGAUCcGCGCGcAGCGCg -3'
miRNA:   3'- gGCUcUCGCU--CUGGaCGCGCaUCGUG- -5'
24575 3' -57 NC_005264.1 + 148287 0.72 0.562837
Target:  5'- gCGGGAGauucugGAGACCgcGCGCGUGcGCGCc -3'
miRNA:   3'- gGCUCUCg-----CUCUGGa-CGCGCAU-CGUG- -5'
24575 3' -57 NC_005264.1 + 133078 0.67 0.848032
Target:  5'- gCCGcGAGCGAG-CUgugGUGCGagcuGCACg -3'
miRNA:   3'- -GGCuCUCGCUCuGGa--CGCGCau--CGUG- -5'
24575 3' -57 NC_005264.1 + 131702 0.68 0.77881
Target:  5'- gCGu-AGCGuGGGCCUGCGCGgcguugcUGGCGCu -3'
miRNA:   3'- gGCucUCGC-UCUGGACGCGC-------AUCGUG- -5'
24575 3' -57 NC_005264.1 + 130525 0.74 0.48543
Target:  5'- gCCGGcGAGauAGACCUGCGCGaAGCGu -3'
miRNA:   3'- -GGCU-CUCgcUCUGGACGCGCaUCGUg -5'
24575 3' -57 NC_005264.1 + 129544 0.7 0.717016
Target:  5'- cUCGccGAGCGGGuCCUGUGCGgcgccgcccucaggGGCGCg -3'
miRNA:   3'- -GGCu-CUCGCUCuGGACGCGCa-------------UCGUG- -5'
24575 3' -57 NC_005264.1 + 125529 0.69 0.751764
Target:  5'- gUCGAGAgaagGCGGGugUUGCuGCGgcugcGGCGCa -3'
miRNA:   3'- -GGCUCU----CGCUCugGACG-CGCa----UCGUG- -5'
24575 3' -57 NC_005264.1 + 125163 0.69 0.761198
Target:  5'- -gGAGGGCGAGGgCcGCGCGcccgucGCGCa -3'
miRNA:   3'- ggCUCUCGCUCUgGaCGCGCau----CGUG- -5'
24575 3' -57 NC_005264.1 + 123097 0.68 0.779725
Target:  5'- cCCGAcAGCGGGGCUguugcacggGCGgCGUcgcGGCACg -3'
miRNA:   3'- -GGCUcUCGCUCUGGa--------CGC-GCA---UCGUG- -5'
24575 3' -57 NC_005264.1 + 122768 0.68 0.770522
Target:  5'- aCGAgGAGCGGGGCCucuUGCcGCcggGGCGCu -3'
miRNA:   3'- gGCU-CUCGCUCUGG---ACG-CGca-UCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.