miRNA display CGI


Results 41 - 60 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24575 3' -57 NC_005264.1 + 31460 0.69 0.742227
Target:  5'- aCGAGAGCGucGCCgauggGCGUGgaUGGUGCg -3'
miRNA:   3'- gGCUCUCGCucUGGa----CGCGC--AUCGUG- -5'
24575 3' -57 NC_005264.1 + 16472 0.66 0.877151
Target:  5'- uCCGAcGAcgcagccGCGGuGGCCUGCGgGgucgaGGCACg -3'
miRNA:   3'- -GGCU-CU-------CGCU-CUGGACGCgCa----UCGUG- -5'
24575 3' -57 NC_005264.1 + 30620 0.66 0.891512
Target:  5'- gCGGcGGCGAcgGAUCcGCGCGcAGCGCg -3'
miRNA:   3'- gGCUcUCGCU--CUGGaCGCGCaUCGUG- -5'
24575 3' -57 NC_005264.1 + 159589 0.76 0.371957
Target:  5'- aCCGAGaAGCGAGACgaGCGaCGgacauGCGCa -3'
miRNA:   3'- -GGCUC-UCGCUCUGgaCGC-GCau---CGUG- -5'
24575 3' -57 NC_005264.1 + 100066 0.75 0.430845
Target:  5'- -aGGGuuuGCGGGGCCUaGgGCGUAGCAUg -3'
miRNA:   3'- ggCUCu--CGCUCUGGA-CgCGCAUCGUG- -5'
24575 3' -57 NC_005264.1 + 33646 0.74 0.457703
Target:  5'- aCGAGGGCuGGGACCaaGCGgGUGGCGg -3'
miRNA:   3'- gGCUCUCG-CUCUGGa-CGCgCAUCGUg -5'
24575 3' -57 NC_005264.1 + 45408 0.68 0.770522
Target:  5'- -gGAGGGCGGcGcCCUGCGCGccGCGa -3'
miRNA:   3'- ggCUCUCGCU-CuGGACGCGCauCGUg -5'
24575 3' -57 NC_005264.1 + 75153 0.69 0.761198
Target:  5'- aCGAGGGCcacgccAGAgUUGUGCaGUAGCGCg -3'
miRNA:   3'- gGCUCUCGc-----UCUgGACGCG-CAUCGUG- -5'
24575 3' -57 NC_005264.1 + 6136 0.69 0.761198
Target:  5'- -gGAGGGCGAGGgCcGCGCGcccgucGCGCa -3'
miRNA:   3'- ggCUCUCGCUCUgGaCGCGCau----CGUG- -5'
24575 3' -57 NC_005264.1 + 125529 0.69 0.751764
Target:  5'- gUCGAGAgaagGCGGGugUUGCuGCGgcugcGGCGCa -3'
miRNA:   3'- -GGCUCU----CGCUCugGACG-CGCa----UCGUG- -5'
24575 3' -57 NC_005264.1 + 52446 0.69 0.751764
Target:  5'- cUCGAGccuGcCGAcGCCgUGCGCGUAGCAg -3'
miRNA:   3'- -GGCUCu--C-GCUcUGG-ACGCGCAUCGUg -5'
24575 3' -57 NC_005264.1 + 71643 0.69 0.751764
Target:  5'- gCCcAGuGCGcGaACCUGUGCGUGGCGu -3'
miRNA:   3'- -GGcUCuCGCuC-UGGACGCGCAUCGUg -5'
24575 3' -57 NC_005264.1 + 4070 0.68 0.779725
Target:  5'- cCCGAcAGCGGGGCUguugcacggGCGgCGUcgcGGCACg -3'
miRNA:   3'- -GGCUcUCGCUCUGGa--------CGC-GCA---UCGUG- -5'
24575 3' -57 NC_005264.1 + 3470 0.68 0.7888
Target:  5'- cUCGGGGGCGAugGGCUUGC-CGccGCACg -3'
miRNA:   3'- -GGCUCUCGCU--CUGGACGcGCauCGUG- -5'
24575 3' -57 NC_005264.1 + 3742 0.68 0.770522
Target:  5'- aCGAgGAGCGGGGCCucuUGCcGCcggGGCGCu -3'
miRNA:   3'- gGCU-CUCGCUCUGG---ACG-CGca-UCGUG- -5'
24575 3' -57 NC_005264.1 + 37120 0.67 0.831953
Target:  5'- aCGAGGGCGAGgcggccgucucgGCCUcGCuGC-UGGCGCc -3'
miRNA:   3'- gGCUCUCGCUC------------UGGA-CG-CGcAUCGUG- -5'
24575 3' -57 NC_005264.1 + 115592 0.67 0.840084
Target:  5'- uCCGgaGGAGUGGGGCCUGCucuGCGccaagAGCu- -3'
miRNA:   3'- -GGC--UCUCGCUCUGGACG---CGCa----UCGug -5'
24575 3' -57 NC_005264.1 + 159726 0.71 0.643162
Target:  5'- aCGAGAaacCGAGACCUgcugcGCGCGaUGGCAg -3'
miRNA:   3'- gGCUCUc--GCUCUGGA-----CGCGC-AUCGUg -5'
24575 3' -57 NC_005264.1 + 101345 0.71 0.633073
Target:  5'- gCGcuAGcCGAGACCgcgggGCGCGUcGGCGCg -3'
miRNA:   3'- gGCucUC-GCUCUGGa----CGCGCA-UCGUG- -5'
24575 3' -57 NC_005264.1 + 130525 0.74 0.48543
Target:  5'- gCCGGcGAGauAGACCUGCGCGaAGCGu -3'
miRNA:   3'- -GGCU-CUCgcUCUGGACGCGCaUCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.