miRNA display CGI


Results 41 - 60 of 66 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24575 5' -53.8 NC_005264.1 + 5383 0.66 0.96896
Target:  5'- cCGGCGCUcgaUUGCuugccaggggccaGCAGGgcguacgcggcaUCUGUCUCGg -3'
miRNA:   3'- -GCUGCGA---AGCG-------------CGUCC------------AGAUAGAGCg -5'
24575 5' -53.8 NC_005264.1 + 135394 0.66 0.96926
Target:  5'- gCGcCGCUcgGCGCAGGUCUggCUgaaaGCc -3'
miRNA:   3'- -GCuGCGAagCGCGUCCAGAuaGAg---CG- -5'
24575 5' -53.8 NC_005264.1 + 48687 0.66 0.96287
Target:  5'- gGGCGCgagucugcUCGuCGC-GGUCg--CUCGCg -3'
miRNA:   3'- gCUGCGa-------AGC-GCGuCCAGauaGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 129389 0.68 0.937374
Target:  5'- cCGugGCgggaauuaauagUCaGCGCggGGGUUUAUuCUCGCg -3'
miRNA:   3'- -GCugCGa-----------AG-CGCG--UCCAGAUA-GAGCG- -5'
24575 5' -53.8 NC_005264.1 + 100526 0.68 0.937374
Target:  5'- aGACGaca-GgGCGGGUCUAguccggacgacgCUCGCg -3'
miRNA:   3'- gCUGCgaagCgCGUCCAGAUa-----------GAGCG- -5'
24575 5' -53.8 NC_005264.1 + 96986 0.7 0.846686
Target:  5'- -uGCGCgUUCGCGUGGGaagggcguaucgUUAUCUCGCg -3'
miRNA:   3'- gcUGCG-AAGCGCGUCCa-----------GAUAGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 14542 0.71 0.831949
Target:  5'- cCGGCGCgcaCGCGCGcGGUCUccagaAUCUCccGCc -3'
miRNA:   3'- -GCUGCGaa-GCGCGU-CCAGA-----UAGAG--CG- -5'
24575 5' -53.8 NC_005264.1 + 59022 0.71 0.823503
Target:  5'- gGAgGCaggCGCGuCAGGUCgGUCUcCGCg -3'
miRNA:   3'- gCUgCGaa-GCGC-GUCCAGaUAGA-GCG- -5'
24575 5' -53.8 NC_005264.1 + 73721 0.71 0.814883
Target:  5'- cCGACgGCcUUGCGCGGGU---UCUCGUa -3'
miRNA:   3'- -GCUG-CGaAGCGCGUCCAgauAGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 30635 0.7 0.871298
Target:  5'- cCGcGCGCagCGCGUAGGUCgucGUCgUCGUc -3'
miRNA:   3'- -GC-UGCGaaGCGCGUCCAGa--UAG-AGCG- -5'
24575 5' -53.8 NC_005264.1 + 62273 0.71 0.788055
Target:  5'- aCGGCGCUUUGCGCccuuGUCccgcgAUCUCGg -3'
miRNA:   3'- -GCUGCGAAGCGCGuc--CAGa----UAGAGCg -5'
24575 5' -53.8 NC_005264.1 + 38046 0.72 0.750356
Target:  5'- aCGACGg-UCGCGUGGGUCUcccagcuuuuuUCUUGCg -3'
miRNA:   3'- -GCUGCgaAGCGCGUCCAGAu----------AGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 98061 0.75 0.619336
Target:  5'- gGGCGCUgCGCGCAGaUC-GUUUCGCg -3'
miRNA:   3'- gCUGCGAaGCGCGUCcAGaUAGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 130554 0.78 0.45189
Target:  5'- gCGGCGCgugugcuaCGCGCAGGUCUcgcUCUCGg -3'
miRNA:   3'- -GCUGCGaa------GCGCGUCCAGAu--AGAGCg -5'
24575 5' -53.8 NC_005264.1 + 103897 0.69 0.898948
Target:  5'- aGACGCcgucaacUUGCGCAGG-CUc-CUCGCg -3'
miRNA:   3'- gCUGCGa------AGCGCGUCCaGAuaGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 64050 0.69 0.881383
Target:  5'- cCGGUGCUUUauaguaguagGCGCAGGUCUcggccuguggguucUCUCGCg -3'
miRNA:   3'- -GCUGCGAAG----------CGCGUCCAGAu-------------AGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 57136 0.69 0.905289
Target:  5'- gGGCGCggaCGUagGCuGGUCUGUCuUUGCg -3'
miRNA:   3'- gCUGCGaa-GCG--CGuCCAGAUAG-AGCG- -5'
24575 5' -53.8 NC_005264.1 + 50814 0.69 0.905289
Target:  5'- uCGGCGCg-CGCGCAGGUUUG---CGUg -3'
miRNA:   3'- -GCUGCGaaGCGCGUCCAGAUagaGCG- -5'
24575 5' -53.8 NC_005264.1 + 76102 0.68 0.92289
Target:  5'- gGGCGCgaacaGCGCggcaucagaggGGGUCUgcagAUCUUGCg -3'
miRNA:   3'- gCUGCGaag--CGCG-----------UCCAGA----UAGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 82217 0.68 0.92289
Target:  5'- gCGGCGCcagcaUCGCGUAGaGU--GUCUCGUu -3'
miRNA:   3'- -GCUGCGa----AGCGCGUC-CAgaUAGAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.