miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24575 5' -53.8 NC_005264.1 + 58117 0.69 0.885573
Target:  5'- gCGGCGCUgcugcgcgaccUCGCGCAGccGUCUGgugCUcCGUc -3'
miRNA:   3'- -GCUGCGA-----------AGCGCGUC--CAGAUa--GA-GCG- -5'
24575 5' -53.8 NC_005264.1 + 78558 0.66 0.972142
Target:  5'- -cGCGCUUUGCGCGucgcuuuugCUGUgUCGCa -3'
miRNA:   3'- gcUGCGAAGCGCGUcca------GAUAgAGCG- -5'
24575 5' -53.8 NC_005264.1 + 9476 0.67 0.95561
Target:  5'- -aACGCUUCGCGC--GUCUuGUCUgcCGCc -3'
miRNA:   3'- gcUGCGAAGCGCGucCAGA-UAGA--GCG- -5'
24575 5' -53.8 NC_005264.1 + 58768 0.69 0.885573
Target:  5'- aGGCGCacgCGCGguGGUCgg---CGCa -3'
miRNA:   3'- gCUGCGaa-GCGCguCCAGauagaGCG- -5'
24575 5' -53.8 NC_005264.1 + 124410 0.66 0.96896
Target:  5'- cCGGCGCUcgaUUGCuugccaggggccaGCAGGgcguacgcggcaUCUGUCUCGg -3'
miRNA:   3'- -GCUGCGA---AGCG-------------CGUCC------------AGAUAGAGCg -5'
24575 5' -53.8 NC_005264.1 + 64055 0.66 0.972142
Target:  5'- cCGAUcg-UCGCGCAGcUCUGUCagcCGCa -3'
miRNA:   3'- -GCUGcgaAGCGCGUCcAGAUAGa--GCG- -5'
24575 5' -53.8 NC_005264.1 + 74718 0.66 0.972142
Target:  5'- gGGCGCggCGCGCGaaaCUGUCUCcuGCu -3'
miRNA:   3'- gCUGCGaaGCGCGUccaGAUAGAG--CG- -5'
24575 5' -53.8 NC_005264.1 + 35659 0.69 0.885573
Target:  5'- -uGCGCUUCGCGCAcgauGGUCg---UUGCg -3'
miRNA:   3'- gcUGCGAAGCGCGU----CCAGauagAGCG- -5'
24575 5' -53.8 NC_005264.1 + 149662 0.7 0.871298
Target:  5'- cCGcGCGCagCGCGUAGGUCgucGUCgUCGUc -3'
miRNA:   3'- -GC-UGCGaaGCGCGUCCAGa--UAG-AGCG- -5'
24575 5' -53.8 NC_005264.1 + 5792 0.69 0.898948
Target:  5'- uGGCGCcacgucugUUCGCGCcuGuacUCUAUUUCGCg -3'
miRNA:   3'- gCUGCG--------AAGCGCGucC---AGAUAGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 26991 0.68 0.938336
Target:  5'- uGACGUggCaCGCGGGUagccauUCUCGCu -3'
miRNA:   3'- gCUGCGaaGcGCGUCCAgau---AGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 5383 0.66 0.96896
Target:  5'- cCGGCGCUcgaUUGCuugccaggggccaGCAGGgcguacgcggcaUCUGUCUCGg -3'
miRNA:   3'- -GCUGCGA---AGCG-------------CGUCC------------AGAUAGAGCg -5'
24575 5' -53.8 NC_005264.1 + 73721 0.71 0.814883
Target:  5'- cCGACgGCcUUGCGCGGGU---UCUCGUa -3'
miRNA:   3'- -GCUG-CGaAGCGCGUCCAgauAGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 59022 0.71 0.823503
Target:  5'- gGAgGCaggCGCGuCAGGUCgGUCUcCGCg -3'
miRNA:   3'- gCUgCGaa-GCGC-GUCCAGaUAGA-GCG- -5'
24575 5' -53.8 NC_005264.1 + 14542 0.71 0.831949
Target:  5'- cCGGCGCgcaCGCGCGcGGUCUccagaAUCUCccGCc -3'
miRNA:   3'- -GCUGCGaa-GCGCGU-CCAGA-----UAGAG--CG- -5'
24575 5' -53.8 NC_005264.1 + 96986 0.7 0.846686
Target:  5'- -uGCGCgUUCGCGUGGGaagggcguaucgUUAUCUCGCg -3'
miRNA:   3'- gcUGCG-AAGCGCGUCCa-----------GAUAGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 139944 0.7 0.848285
Target:  5'- cCGACGCggugcugcuaUCGUGCccgaaccagGGGUCUAUUUCGa -3'
miRNA:   3'- -GCUGCGa---------AGCGCG---------UCCAGAUAGAGCg -5'
24575 5' -53.8 NC_005264.1 + 7143 0.67 0.95561
Target:  5'- cCGACGaaacguggUCGCGgcCAGGUCcAUC-CGCg -3'
miRNA:   3'- -GCUGCga------AGCGC--GUCCAGaUAGaGCG- -5'
24575 5' -53.8 NC_005264.1 + 57777 0.67 0.95561
Target:  5'- ---gGCUUCGCGUc-GUCUAgcucCUCGCg -3'
miRNA:   3'- gcugCGAAGCGCGucCAGAUa---GAGCG- -5'
24575 5' -53.8 NC_005264.1 + 7888 0.67 0.943007
Target:  5'- aGAUGCggCGuCGgAGGUCUc-CUCGCc -3'
miRNA:   3'- gCUGCGaaGC-GCgUCCAGAuaGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.