Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24575 | 5' | -53.8 | NC_005264.1 | + | 32309 | 1.11 | 0.003971 |
Target: 5'- gCGACGCUUCGCGCAGGUCUAUCUCGCc -3' miRNA: 3'- -GCUGCGAAGCGCGUCCAGAUAGAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 91064 | 0.68 | 0.938336 |
Target: 5'- aGGCGCUUCuGCaacggcgccaGCAGGUCggcuaGUCguaaCGCg -3' miRNA: 3'- gCUGCGAAG-CG----------CGUCCAGa----UAGa---GCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 9476 | 0.67 | 0.95561 |
Target: 5'- -aACGCUUCGCGC--GUCUuGUCUgcCGCc -3' miRNA: 3'- gcUGCGAAGCGCGucCAGA-UAGA--GCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 128946 | 0.66 | 0.974824 |
Target: 5'- gCGGCGCUaucUCGCGCuAGGU---UCgaaGCa -3' miRNA: 3'- -GCUGCGA---AGCGCG-UCCAgauAGag-CG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 5534 | 0.71 | 0.831949 |
Target: 5'- gCGGCGUcUCGCGCggagcGGGUUUcUCUuCGCa -3' miRNA: 3'- -GCUGCGaAGCGCG-----UCCAGAuAGA-GCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 42672 | 0.7 | 0.871298 |
Target: 5'- --uCGCUUCGUGUuccAGGUCUG-CUCGg -3' miRNA: 3'- gcuGCGAAGCGCG---UCCAGAUaGAGCg -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 35659 | 0.69 | 0.885573 |
Target: 5'- -uGCGCUUCGCGCAcgauGGUCg---UUGCg -3' miRNA: 3'- gcUGCGAAGCGCGU----CCAGauagAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 58768 | 0.69 | 0.885573 |
Target: 5'- aGGCGCacgCGCGguGGUCgg---CGCa -3' miRNA: 3'- gCUGCGaa-GCGCguCCAGauagaGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 75820 | 0.68 | 0.911394 |
Target: 5'- aGGCGC---GCGguGGUCUAUgUUGUg -3' miRNA: 3'- gCUGCGaagCGCguCCAGAUAgAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 26991 | 0.68 | 0.938336 |
Target: 5'- uGACGUggCaCGCGGGUagccauUCUCGCu -3' miRNA: 3'- gCUGCGaaGcGCGUCCAgau---AGAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 51085 | 0.68 | 0.92289 |
Target: 5'- aGACcuGCUUCGCggucgccgguGCugcGGUCUG-CUCGCg -3' miRNA: 3'- gCUG--CGAAGCG----------CGu--CCAGAUaGAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 5792 | 0.69 | 0.898948 |
Target: 5'- uGGCGCcacgucugUUCGCGCcuGuacUCUAUUUCGCg -3' miRNA: 3'- gCUGCG--------AAGCGCGucC---AGAUAGAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 22006 | 0.72 | 0.740648 |
Target: 5'- aGGCGCggCGCGUAGGUUUuuugCcCGCg -3' miRNA: 3'- gCUGCGaaGCGCGUCCAGAua--GaGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 20262 | 0.68 | 0.928279 |
Target: 5'- gCGGCGCggccUCGCGgAGGggaCcGUCUgCGCg -3' miRNA: 3'- -GCUGCGa---AGCGCgUCCa--GaUAGA-GCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 157073 | 0.72 | 0.750356 |
Target: 5'- aCGACGg-UCGCGUGGGUCUcccagcuuuuuUCUUGCg -3' miRNA: 3'- -GCUGCgaAGCGCGUCCAGAu----------AGAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 58117 | 0.69 | 0.885573 |
Target: 5'- gCGGCGCUgcugcgcgaccUCGCGCAGccGUCUGgugCUcCGUc -3' miRNA: 3'- -GCUGCGA-----------AGCGCGUC--CAGAUa--GA-GCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 94718 | 0.68 | 0.928279 |
Target: 5'- aCGGCGCccaUGCGUuuuGUCUuuuGUCUCGCa -3' miRNA: 3'- -GCUGCGaa-GCGCGuc-CAGA---UAGAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 126914 | 0.67 | 0.943007 |
Target: 5'- aGAUGCggCGuCGgAGGUCUc-CUCGCc -3' miRNA: 3'- gCUGCGaaGC-GCgUCCAGAuaGAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 56596 | 0.72 | 0.769452 |
Target: 5'- uGGCGCUaCGCGCGGcccaUCUgggAUCUUGCa -3' miRNA: 3'- gCUGCGAaGCGCGUCc---AGA---UAGAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 149662 | 0.7 | 0.871298 |
Target: 5'- cCGcGCGCagCGCGUAGGUCgucGUCgUCGUc -3' miRNA: 3'- -GC-UGCGaaGCGCGUCCAGa--UAG-AGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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