Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24575 | 5' | -53.8 | NC_005264.1 | + | 50814 | 0.69 | 0.905289 |
Target: 5'- uCGGCGCg-CGCGCAGGUUUG---CGUg -3' miRNA: 3'- -GCUGCGaaGCGCGUCCAGAUagaGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 7143 | 0.67 | 0.95561 |
Target: 5'- cCGACGaaacguggUCGCGgcCAGGUCcAUC-CGCg -3' miRNA: 3'- -GCUGCga------AGCGC--GUCCAGaUAGaGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 57777 | 0.67 | 0.95561 |
Target: 5'- ---gGCUUCGCGUc-GUCUAgcucCUCGCg -3' miRNA: 3'- gcugCGAAGCGCGucCAGAUa---GAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 7888 | 0.67 | 0.943007 |
Target: 5'- aGAUGCggCGuCGgAGGUCUc-CUCGCc -3' miRNA: 3'- gCUGCGaaGC-GCgUCCAGAuaGAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 100723 | 0.68 | 0.938336 |
Target: 5'- aCGugGCUcuggagaggGCGCuGGUCgagCUCGCc -3' miRNA: 3'- -GCugCGAag-------CGCGuCCAGauaGAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 129389 | 0.68 | 0.937374 |
Target: 5'- cCGugGCgggaauuaauagUCaGCGCggGGGUUUAUuCUCGCg -3' miRNA: 3'- -GCugCGa-----------AG-CGCG--UCCAGAUA-GAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 100526 | 0.68 | 0.937374 |
Target: 5'- aGACGaca-GgGCGGGUCUAguccggacgacgCUCGCg -3' miRNA: 3'- gCUGCgaagCgCGUCCAGAUa-----------GAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 82217 | 0.68 | 0.92289 |
Target: 5'- gCGGCGCcagcaUCGCGUAGaGU--GUCUCGUu -3' miRNA: 3'- -GCUGCGa----AGCGCGUC-CAgaUAGAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 76102 | 0.68 | 0.92289 |
Target: 5'- gGGCGCgaacaGCGCggcaucagaggGGGUCUgcagAUCUUGCg -3' miRNA: 3'- gCUGCGaag--CGCG-----------UCCAGA----UAGAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 116412 | 0.67 | 0.95561 |
Target: 5'- cCGACGUcgaGCGCAGGgcggCgugcagcCUCGCg -3' miRNA: 3'- -GCUGCGaagCGCGUCCa---Gaua----GAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 93260 | 0.67 | 0.959351 |
Target: 5'- uCGGCGCgUUCGCGCaaccugaauAGGUCgGUCagauUCGg -3' miRNA: 3'- -GCUGCG-AAGCGCG---------UCCAGaUAG----AGCg -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 146081 | 0.67 | 0.959351 |
Target: 5'- -aGCGCgccccCGCGCGGGUCUugguggaCUaCGCa -3' miRNA: 3'- gcUGCGaa---GCGCGUCCAGAua-----GA-GCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 153817 | 0.66 | 0.972142 |
Target: 5'- aGGCGCgaaCGCGuCGGGaCUAacggcggCUCGCc -3' miRNA: 3'- gCUGCGaa-GCGC-GUCCaGAUa------GAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 88475 | 0.66 | 0.972142 |
Target: 5'- aCGACGCcgUUGUGU-GGaUUGUCUCGUc -3' miRNA: 3'- -GCUGCGa-AGCGCGuCCaGAUAGAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 59772 | 0.66 | 0.971298 |
Target: 5'- gGACGCUUCGCgggacucgucgcccGCAGGgggCg--CguagCGCa -3' miRNA: 3'- gCUGCGAAGCG--------------CGUCCa--GauaGa---GCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 38679 | 0.66 | 0.96926 |
Target: 5'- gCGACGCccccgUCGUaauuuccuacGUAGGUCccagCUCGCc -3' miRNA: 3'- -GCUGCGa----AGCG----------CGUCCAGaua-GAGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 135394 | 0.66 | 0.96926 |
Target: 5'- gCGcCGCUcgGCGCAGGUCUggCUgaaaGCc -3' miRNA: 3'- -GCuGCGAagCGCGUCCAGAuaGAg---CG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 5383 | 0.66 | 0.96896 |
Target: 5'- cCGGCGCUcgaUUGCuugccaggggccaGCAGGgcguacgcggcaUCUGUCUCGg -3' miRNA: 3'- -GCUGCGA---AGCG-------------CGUCC------------AGAUAGAGCg -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 58121 | 0.66 | 0.966171 |
Target: 5'- aGAUGUUccUUGCGUAGGUUUuUCaCGCg -3' miRNA: 3'- gCUGCGA--AGCGCGUCCAGAuAGaGCG- -5' |
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24575 | 5' | -53.8 | NC_005264.1 | + | 48687 | 0.66 | 0.96287 |
Target: 5'- gGGCGCgagucugcUCGuCGC-GGUCg--CUCGCg -3' miRNA: 3'- gCUGCGa-------AGC-GCGuCCAGauaGAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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