miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24575 5' -53.8 NC_005264.1 + 5383 0.66 0.96896
Target:  5'- cCGGCGCUcgaUUGCuugccaggggccaGCAGGgcguacgcggcaUCUGUCUCGg -3'
miRNA:   3'- -GCUGCGA---AGCG-------------CGUCC------------AGAUAGAGCg -5'
24575 5' -53.8 NC_005264.1 + 5534 0.71 0.831949
Target:  5'- gCGGCGUcUCGCGCggagcGGGUUUcUCUuCGCa -3'
miRNA:   3'- -GCUGCGaAGCGCG-----UCCAGAuAGA-GCG- -5'
24575 5' -53.8 NC_005264.1 + 5792 0.69 0.898948
Target:  5'- uGGCGCcacgucugUUCGCGCcuGuacUCUAUUUCGCg -3'
miRNA:   3'- gCUGCG--------AAGCGCGucC---AGAUAGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 7143 0.67 0.95561
Target:  5'- cCGACGaaacguggUCGCGgcCAGGUCcAUC-CGCg -3'
miRNA:   3'- -GCUGCga------AGCGC--GUCCAGaUAGaGCG- -5'
24575 5' -53.8 NC_005264.1 + 7888 0.67 0.943007
Target:  5'- aGAUGCggCGuCGgAGGUCUc-CUCGCc -3'
miRNA:   3'- gCUGCGaaGC-GCgUCCAGAuaGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 8631 0.66 0.972142
Target:  5'- aGGCGCUUCacCGCcacGUCUacGUUUCGCg -3'
miRNA:   3'- gCUGCGAAGc-GCGuc-CAGA--UAGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 9476 0.67 0.95561
Target:  5'- -aACGCUUCGCGC--GUCUuGUCUgcCGCc -3'
miRNA:   3'- gcUGCGAAGCGCGucCAGA-UAGA--GCG- -5'
24575 5' -53.8 NC_005264.1 + 9920 0.66 0.974824
Target:  5'- gCGGCGCUaucUCGCGCuAGGU---UCgaaGCa -3'
miRNA:   3'- -GCUGCGA---AGCGCG-UCCAgauAGag-CG- -5'
24575 5' -53.8 NC_005264.1 + 14542 0.71 0.831949
Target:  5'- cCGGCGCgcaCGCGCGcGGUCUccagaAUCUCccGCc -3'
miRNA:   3'- -GCUGCGaa-GCGCGU-CCAGA-----UAGAG--CG- -5'
24575 5' -53.8 NC_005264.1 + 20262 0.68 0.928279
Target:  5'- gCGGCGCggccUCGCGgAGGggaCcGUCUgCGCg -3'
miRNA:   3'- -GCUGCGa---AGCGCgUCCa--GaUAGA-GCG- -5'
24575 5' -53.8 NC_005264.1 + 22006 0.72 0.740648
Target:  5'- aGGCGCggCGCGUAGGUUUuuugCcCGCg -3'
miRNA:   3'- gCUGCGaaGCGCGUCCAGAua--GaGCG- -5'
24575 5' -53.8 NC_005264.1 + 26991 0.68 0.938336
Target:  5'- uGACGUggCaCGCGGGUagccauUCUCGCu -3'
miRNA:   3'- gCUGCGaaGcGCGUCCAgau---AGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 30635 0.7 0.871298
Target:  5'- cCGcGCGCagCGCGUAGGUCgucGUCgUCGUc -3'
miRNA:   3'- -GC-UGCGaaGCGCGUCCAGa--UAG-AGCG- -5'
24575 5' -53.8 NC_005264.1 + 32309 1.11 0.003971
Target:  5'- gCGACGCUUCGCGCAGGUCUAUCUCGCc -3'
miRNA:   3'- -GCUGCGAAGCGCGUCCAGAUAGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 35659 0.69 0.885573
Target:  5'- -uGCGCUUCGCGCAcgauGGUCg---UUGCg -3'
miRNA:   3'- gcUGCGAAGCGCGU----CCAGauagAGCG- -5'
24575 5' -53.8 NC_005264.1 + 38046 0.72 0.750356
Target:  5'- aCGACGg-UCGCGUGGGUCUcccagcuuuuuUCUUGCg -3'
miRNA:   3'- -GCUGCgaAGCGCGUCCAGAu----------AGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 38679 0.66 0.96926
Target:  5'- gCGACGCccccgUCGUaauuuccuacGUAGGUCccagCUCGCc -3'
miRNA:   3'- -GCUGCGa----AGCG----------CGUCCAGaua-GAGCG- -5'
24575 5' -53.8 NC_005264.1 + 42672 0.7 0.871298
Target:  5'- --uCGCUUCGUGUuccAGGUCUG-CUCGg -3'
miRNA:   3'- gcuGCGAAGCGCG---UCCAGAUaGAGCg -5'
24575 5' -53.8 NC_005264.1 + 48687 0.66 0.96287
Target:  5'- gGGCGCgagucugcUCGuCGC-GGUCg--CUCGCg -3'
miRNA:   3'- gCUGCGa-------AGC-GCGuCCAGauaGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 50814 0.69 0.905289
Target:  5'- uCGGCGCg-CGCGCAGGUUUG---CGUg -3'
miRNA:   3'- -GCUGCGaaGCGCGUCCAGAUagaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.