miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24575 5' -53.8 NC_005264.1 + 51085 0.68 0.92289
Target:  5'- aGACcuGCUUCGCggucgccgguGCugcGGUCUG-CUCGCg -3'
miRNA:   3'- gCUG--CGAAGCG----------CGu--CCAGAUaGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 52952 0.67 0.957133
Target:  5'- gCGGCGCaUUGCGCcgcgGGGUauuccgcucuguccaCUAgCUCGCg -3'
miRNA:   3'- -GCUGCGaAGCGCG----UCCA---------------GAUaGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 56596 0.72 0.769452
Target:  5'- uGGCGCUaCGCGCGGcccaUCUgggAUCUUGCa -3'
miRNA:   3'- gCUGCGAaGCGCGUCc---AGA---UAGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 57136 0.69 0.905289
Target:  5'- gGGCGCggaCGUagGCuGGUCUGUCuUUGCg -3'
miRNA:   3'- gCUGCGaa-GCG--CGuCCAGAUAG-AGCG- -5'
24575 5' -53.8 NC_005264.1 + 57777 0.67 0.95561
Target:  5'- ---gGCUUCGCGUc-GUCUAgcucCUCGCg -3'
miRNA:   3'- gcugCGAAGCGCGucCAGAUa---GAGCG- -5'
24575 5' -53.8 NC_005264.1 + 58117 0.69 0.885573
Target:  5'- gCGGCGCUgcugcgcgaccUCGCGCAGccGUCUGgugCUcCGUc -3'
miRNA:   3'- -GCUGCGA-----------AGCGCGUC--CAGAUa--GA-GCG- -5'
24575 5' -53.8 NC_005264.1 + 58121 0.66 0.966171
Target:  5'- aGAUGUUccUUGCGUAGGUUUuUCaCGCg -3'
miRNA:   3'- gCUGCGA--AGCGCGUCCAGAuAGaGCG- -5'
24575 5' -53.8 NC_005264.1 + 58768 0.69 0.885573
Target:  5'- aGGCGCacgCGCGguGGUCgg---CGCa -3'
miRNA:   3'- gCUGCGaa-GCGCguCCAGauagaGCG- -5'
24575 5' -53.8 NC_005264.1 + 59022 0.71 0.823503
Target:  5'- gGAgGCaggCGCGuCAGGUCgGUCUcCGCg -3'
miRNA:   3'- gCUgCGaa-GCGC-GUCCAGaUAGA-GCG- -5'
24575 5' -53.8 NC_005264.1 + 59772 0.66 0.971298
Target:  5'- gGACGCUUCGCgggacucgucgcccGCAGGgggCg--CguagCGCa -3'
miRNA:   3'- gCUGCGAAGCG--------------CGUCCa--GauaGa---GCG- -5'
24575 5' -53.8 NC_005264.1 + 62273 0.71 0.788055
Target:  5'- aCGGCGCUUUGCGCccuuGUCccgcgAUCUCGg -3'
miRNA:   3'- -GCUGCGAAGCGCGuc--CAGa----UAGAGCg -5'
24575 5' -53.8 NC_005264.1 + 64050 0.69 0.881383
Target:  5'- cCGGUGCUUUauaguaguagGCGCAGGUCUcggccuguggguucUCUCGCg -3'
miRNA:   3'- -GCUGCGAAG----------CGCGUCCAGAu-------------AGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 64055 0.66 0.972142
Target:  5'- cCGAUcg-UCGCGCAGcUCUGUCagcCGCa -3'
miRNA:   3'- -GCUGcgaAGCGCGUCcAGAUAGa--GCG- -5'
24575 5' -53.8 NC_005264.1 + 65370 0.68 0.917262
Target:  5'- uGACGC--CGC-CGGGUagaGUCUCGCa -3'
miRNA:   3'- gCUGCGaaGCGcGUCCAga-UAGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 73721 0.71 0.814883
Target:  5'- cCGACgGCcUUGCGCGGGU---UCUCGUa -3'
miRNA:   3'- -GCUG-CGaAGCGCGUCCAgauAGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 74718 0.66 0.972142
Target:  5'- gGGCGCggCGCGCGaaaCUGUCUCcuGCu -3'
miRNA:   3'- gCUGCGaaGCGCGUccaGAUAGAG--CG- -5'
24575 5' -53.8 NC_005264.1 + 75820 0.68 0.911394
Target:  5'- aGGCGC---GCGguGGUCUAUgUUGUg -3'
miRNA:   3'- gCUGCGaagCGCguCCAGAUAgAGCG- -5'
24575 5' -53.8 NC_005264.1 + 76102 0.68 0.92289
Target:  5'- gGGCGCgaacaGCGCggcaucagaggGGGUCUgcagAUCUUGCg -3'
miRNA:   3'- gCUGCGaag--CGCG-----------UCCAGA----UAGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 78558 0.66 0.972142
Target:  5'- -cGCGCUUUGCGCGucgcuuuugCUGUgUCGCa -3'
miRNA:   3'- gcUGCGAAGCGCGUcca------GAUAgAGCG- -5'
24575 5' -53.8 NC_005264.1 + 82217 0.68 0.92289
Target:  5'- gCGGCGCcagcaUCGCGUAGaGU--GUCUCGUu -3'
miRNA:   3'- -GCUGCGa----AGCGCGUC-CAgaUAGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.