miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24575 5' -53.8 NC_005264.1 + 32309 1.11 0.003971
Target:  5'- gCGACGCUUCGCGCAGGUCUAUCUCGCc -3'
miRNA:   3'- -GCUGCGAAGCGCGUCCAGAUAGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 130554 0.78 0.45189
Target:  5'- gCGGCGCgugugcuaCGCGCAGGUCUcgcUCUCGg -3'
miRNA:   3'- -GCUGCGaa------GCGCGUCCAGAu--AGAGCg -5'
24575 5' -53.8 NC_005264.1 + 98061 0.75 0.619336
Target:  5'- gGGCGCUgCGCGCAGaUC-GUUUCGCg -3'
miRNA:   3'- gCUGCGAaGCGCGUCcAGaUAGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 22006 0.72 0.740648
Target:  5'- aGGCGCggCGCGUAGGUUUuuugCcCGCg -3'
miRNA:   3'- gCUGCGaaGCGCGUCCAGAua--GaGCG- -5'
24575 5' -53.8 NC_005264.1 + 38046 0.72 0.750356
Target:  5'- aCGACGg-UCGCGUGGGUCUcccagcuuuuuUCUUGCg -3'
miRNA:   3'- -GCUGCgaAGCGCGUCCAGAu----------AGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 157073 0.72 0.750356
Target:  5'- aCGACGg-UCGCGUGGGUCUcccagcuuuuuUCUUGCg -3'
miRNA:   3'- -GCUGCgaAGCGCGUCCAGAu----------AGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 56596 0.72 0.769452
Target:  5'- uGGCGCUaCGCGCGGcccaUCUgggAUCUUGCa -3'
miRNA:   3'- gCUGCGAaGCGCGUCc---AGA---UAGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 62273 0.71 0.788055
Target:  5'- aCGGCGCUUUGCGCccuuGUCccgcgAUCUCGg -3'
miRNA:   3'- -GCUGCGAAGCGCGuc--CAGa----UAGAGCg -5'
24575 5' -53.8 NC_005264.1 + 97942 0.71 0.814883
Target:  5'- aGA-GCUUCGCGUcgAGGUC-AUCUcCGCc -3'
miRNA:   3'- gCUgCGAAGCGCG--UCCAGaUAGA-GCG- -5'
24575 5' -53.8 NC_005264.1 + 73721 0.71 0.814883
Target:  5'- cCGACgGCcUUGCGCGGGU---UCUCGUa -3'
miRNA:   3'- -GCUG-CGaAGCGCGUCCAgauAGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 59022 0.71 0.823503
Target:  5'- gGAgGCaggCGCGuCAGGUCgGUCUcCGCg -3'
miRNA:   3'- gCUgCGaa-GCGC-GUCCAGaUAGA-GCG- -5'
24575 5' -53.8 NC_005264.1 + 14542 0.71 0.831949
Target:  5'- cCGGCGCgcaCGCGCGcGGUCUccagaAUCUCccGCc -3'
miRNA:   3'- -GCUGCGaa-GCGCGU-CCAGA-----UAGAG--CG- -5'
24575 5' -53.8 NC_005264.1 + 5534 0.71 0.831949
Target:  5'- gCGGCGUcUCGCGCggagcGGGUUUcUCUuCGCa -3'
miRNA:   3'- -GCUGCGaAGCGCG-----UCCAGAuAGA-GCG- -5'
24575 5' -53.8 NC_005264.1 + 96986 0.7 0.846686
Target:  5'- -uGCGCgUUCGCGUGGGaagggcguaucgUUAUCUCGCg -3'
miRNA:   3'- gcUGCG-AAGCGCGUCCa-----------GAUAGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 139944 0.7 0.848285
Target:  5'- cCGACGCggugcugcuaUCGUGCccgaaccagGGGUCUAUUUCGa -3'
miRNA:   3'- -GCUGCGa---------AGCGCG---------UCCAGAUAGAGCg -5'
24575 5' -53.8 NC_005264.1 + 42672 0.7 0.871298
Target:  5'- --uCGCUUCGUGUuccAGGUCUG-CUCGg -3'
miRNA:   3'- gcuGCGAAGCGCG---UCCAGAUaGAGCg -5'
24575 5' -53.8 NC_005264.1 + 149662 0.7 0.871298
Target:  5'- cCGcGCGCagCGCGUAGGUCgucGUCgUCGUc -3'
miRNA:   3'- -GC-UGCGaaGCGCGUCCAGa--UAG-AGCG- -5'
24575 5' -53.8 NC_005264.1 + 30635 0.7 0.871298
Target:  5'- cCGcGCGCagCGCGUAGGUCgucGUCgUCGUc -3'
miRNA:   3'- -GC-UGCGaaGCGCGUCCAGa--UAG-AGCG- -5'
24575 5' -53.8 NC_005264.1 + 64050 0.69 0.881383
Target:  5'- cCGGUGCUUUauaguaguagGCGCAGGUCUcggccuguggguucUCUCGCg -3'
miRNA:   3'- -GCUGCGAAG----------CGCGUCCAGAu-------------AGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 35659 0.69 0.885573
Target:  5'- -uGCGCUUCGCGCAcgauGGUCg---UUGCg -3'
miRNA:   3'- gcUGCGAAGCGCGU----CCAGauagAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.