miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24575 5' -53.8 NC_005264.1 + 157705 0.66 0.96926
Target:  5'- gCGACGCccccgUCGUaauuuccuacGUAGGUCccagCUCGCc -3'
miRNA:   3'- -GCUGCGa----AGCG----------CGUCCAGaua-GAGCG- -5'
24575 5' -53.8 NC_005264.1 + 157073 0.72 0.750356
Target:  5'- aCGACGg-UCGCGUGGGUCUcccagcuuuuuUCUUGCg -3'
miRNA:   3'- -GCUGCgaAGCGCGUCCAGAu----------AGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 153817 0.66 0.972142
Target:  5'- aGGCGCgaaCGCGuCGGGaCUAacggcggCUCGCc -3'
miRNA:   3'- gCUGCGaa-GCGC-GUCCaGAUa------GAGCG- -5'
24575 5' -53.8 NC_005264.1 + 149662 0.7 0.871298
Target:  5'- cCGcGCGCagCGCGUAGGUCgucGUCgUCGUc -3'
miRNA:   3'- -GC-UGCGaaGCGCGUCCAGa--UAG-AGCG- -5'
24575 5' -53.8 NC_005264.1 + 146081 0.67 0.959351
Target:  5'- -aGCGCgccccCGCGCGGGUCUugguggaCUaCGCa -3'
miRNA:   3'- gcUGCGaa---GCGCGUCCAGAua-----GA-GCG- -5'
24575 5' -53.8 NC_005264.1 + 139944 0.7 0.848285
Target:  5'- cCGACGCggugcugcuaUCGUGCccgaaccagGGGUCUAUUUCGa -3'
miRNA:   3'- -GCUGCGa---------AGCGCG---------UCCAGAUAGAGCg -5'
24575 5' -53.8 NC_005264.1 + 135394 0.66 0.96926
Target:  5'- gCGcCGCUcgGCGCAGGUCUggCUgaaaGCc -3'
miRNA:   3'- -GCuGCGAagCGCGUCCAGAuaGAg---CG- -5'
24575 5' -53.8 NC_005264.1 + 130554 0.78 0.45189
Target:  5'- gCGGCGCgugugcuaCGCGCAGGUCUcgcUCUCGg -3'
miRNA:   3'- -GCUGCGaa------GCGCGUCCAGAu--AGAGCg -5'
24575 5' -53.8 NC_005264.1 + 129389 0.68 0.937374
Target:  5'- cCGugGCgggaauuaauagUCaGCGCggGGGUUUAUuCUCGCg -3'
miRNA:   3'- -GCugCGa-----------AG-CGCG--UCCAGAUA-GAGCG- -5'
24575 5' -53.8 NC_005264.1 + 128946 0.66 0.974824
Target:  5'- gCGGCGCUaucUCGCGCuAGGU---UCgaaGCa -3'
miRNA:   3'- -GCUGCGA---AGCGCG-UCCAgauAGag-CG- -5'
24575 5' -53.8 NC_005264.1 + 126914 0.67 0.943007
Target:  5'- aGAUGCggCGuCGgAGGUCUc-CUCGCc -3'
miRNA:   3'- gCUGCGaaGC-GCgUCCAGAuaGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 126170 0.67 0.95561
Target:  5'- cCGACGaaacguggUCGCGgcCAGGUCcAUC-CGCg -3'
miRNA:   3'- -GCUGCga------AGCGC--GUCCAGaUAGaGCG- -5'
24575 5' -53.8 NC_005264.1 + 124410 0.66 0.96896
Target:  5'- cCGGCGCUcgaUUGCuugccaggggccaGCAGGgcguacgcggcaUCUGUCUCGg -3'
miRNA:   3'- -GCUGCGA---AGCG-------------CGUCC------------AGAUAGAGCg -5'
24575 5' -53.8 NC_005264.1 + 116412 0.67 0.95561
Target:  5'- cCGACGUcgaGCGCAGGgcggCgugcagcCUCGCg -3'
miRNA:   3'- -GCUGCGaagCGCGUCCa---Gaua----GAGCG- -5'
24575 5' -53.8 NC_005264.1 + 103897 0.69 0.898948
Target:  5'- aGACGCcgucaacUUGCGCAGG-CUc-CUCGCg -3'
miRNA:   3'- gCUGCGa------AGCGCGUCCaGAuaGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 100723 0.68 0.938336
Target:  5'- aCGugGCUcuggagaggGCGCuGGUCgagCUCGCc -3'
miRNA:   3'- -GCugCGAag-------CGCGuCCAGauaGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 100526 0.68 0.937374
Target:  5'- aGACGaca-GgGCGGGUCUAguccggacgacgCUCGCg -3'
miRNA:   3'- gCUGCgaagCgCGUCCAGAUa-----------GAGCG- -5'
24575 5' -53.8 NC_005264.1 + 98061 0.75 0.619336
Target:  5'- gGGCGCUgCGCGCAGaUC-GUUUCGCg -3'
miRNA:   3'- gCUGCGAaGCGCGUCcAGaUAGAGCG- -5'
24575 5' -53.8 NC_005264.1 + 97942 0.71 0.814883
Target:  5'- aGA-GCUUCGCGUcgAGGUC-AUCUcCGCc -3'
miRNA:   3'- gCUgCGAAGCGCG--UCCAGaUAGA-GCG- -5'
24575 5' -53.8 NC_005264.1 + 96986 0.7 0.846686
Target:  5'- -uGCGCgUUCGCGUGGGaagggcguaucgUUAUCUCGCg -3'
miRNA:   3'- gcUGCG-AAGCGCGUCCa-----------GAUAGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.