miRNA display CGI


Results 1 - 20 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24594 3' -57.5 NC_005264.1 + 101011 0.66 0.879048
Target:  5'- cGCGGcgcAGGCGAGcca-GGCAcugccCGGCGAu -3'
miRNA:   3'- -UGCCu--UCCGCUCuucaCCGU-----GCCGCU- -5'
24594 3' -57.5 NC_005264.1 + 43148 0.66 0.879048
Target:  5'- cACGGGuGGaGCGGGGAGgggGGgGCGcGUGAg -3'
miRNA:   3'- -UGCCU-UC-CGCUCUUCa--CCgUGC-CGCU- -5'
24594 3' -57.5 NC_005264.1 + 1294 0.66 0.879048
Target:  5'- -gGGAcuAGGUGAGucG-GGCgauguACGGCGAu -3'
miRNA:   3'- ugCCU--UCCGCUCuuCaCCG-----UGCCGCU- -5'
24594 3' -57.5 NC_005264.1 + 162175 0.66 0.879048
Target:  5'- cACGGGuGGaGCGGGGAGgggGGgGCGcGUGAg -3'
miRNA:   3'- -UGCCU-UC-CGCUCUUCa--CCgUGC-CGCU- -5'
24594 3' -57.5 NC_005264.1 + 98450 0.66 0.879048
Target:  5'- gUGGAGcucGGCGGGAuuuGUcaacccggccGGCACGcGCGAg -3'
miRNA:   3'- uGCCUU---CCGCUCUu--CA----------CCGUGC-CGCU- -5'
24594 3' -57.5 NC_005264.1 + 120321 0.66 0.879048
Target:  5'- -gGGAcuAGGUGAGucG-GGCgauguACGGCGAu -3'
miRNA:   3'- ugCCU--UCCGCUCuuCaCCG-----UGCCGCU- -5'
24594 3' -57.5 NC_005264.1 + 15717 0.66 0.864622
Target:  5'- gUGGAAGaaGCaAGAAcGcGGCACGGCGGc -3'
miRNA:   3'- uGCCUUC--CGcUCUU-CaCCGUGCCGCU- -5'
24594 3' -57.5 NC_005264.1 + 143852 0.66 0.863879
Target:  5'- uACGcccauGAAGGCGcacgaAGAcucuauaAGUcGGCGCGGCGGg -3'
miRNA:   3'- -UGC-----CUUCCGC-----UCU-------UCA-CCGUGCCGCU- -5'
24594 3' -57.5 NC_005264.1 + 74266 0.66 0.848601
Target:  5'- gGCGGuaGAGGCGGGGccucauaUGGCagcauuaGCGGCGGu -3'
miRNA:   3'- -UGCC--UUCCGCUCUuc-----ACCG-------UGCCGCU- -5'
24594 3' -57.5 NC_005264.1 + 124754 0.66 0.841474
Target:  5'- cCGGggGGCcaaGGAA---GCACGGCGGg -3'
miRNA:   3'- uGCCuuCCGc--UCUUcacCGUGCCGCU- -5'
24594 3' -57.5 NC_005264.1 + 127384 0.66 0.841474
Target:  5'- cGCGucAGGCGAuGGuuacGUGGUGCGGCa- -3'
miRNA:   3'- -UGCcuUCCGCU-CUu---CACCGUGCCGcu -5'
24594 3' -57.5 NC_005264.1 + 143092 0.66 0.841474
Target:  5'- cGCGGc--GCGAugcuGGgGGCACGGCGAa -3'
miRNA:   3'- -UGCCuucCGCUcu--UCaCCGUGCCGCU- -5'
24594 3' -57.5 NC_005264.1 + 44910 0.67 0.833379
Target:  5'- gGCGGGAGGaGAGAuccGGCGCaaGCGAa -3'
miRNA:   3'- -UGCCUUCCgCUCUucaCCGUGc-CGCU- -5'
24594 3' -57.5 NC_005264.1 + 103675 0.67 0.820063
Target:  5'- -gGGAgaacuggcagcuGGGCGAGGgggaaguugagggccAGUGGaGCGGCGGc -3'
miRNA:   3'- ugCCU------------UCCGCUCU---------------UCACCgUGCCGCU- -5'
24594 3' -57.5 NC_005264.1 + 120720 0.67 0.816666
Target:  5'- gGCGGucGGGCG-GAGGacGGUGCcGGCGAc -3'
miRNA:   3'- -UGCCu-UCCGCuCUUCa-CCGUG-CCGCU- -5'
24594 3' -57.5 NC_005264.1 + 96851 0.67 0.814101
Target:  5'- gGCGGAuGGCgcaguugagGAGAuggacgaguauugaAGaUGGCAUGGCGGc -3'
miRNA:   3'- -UGCCUuCCG---------CUCU--------------UC-ACCGUGCCGCU- -5'
24594 3' -57.5 NC_005264.1 + 139404 0.67 0.811522
Target:  5'- uACGGAAccgcGGCGGGAGGgaaaaauauuuuagGGUggccaugucgGCGGCGGu -3'
miRNA:   3'- -UGCCUU----CCGCUCUUCa-------------CCG----------UGCCGCU- -5'
24594 3' -57.5 NC_005264.1 + 144509 0.67 0.808061
Target:  5'- uGCcGAAGGCGucgugggcAGAGGcaacUGGCAgGGCGGg -3'
miRNA:   3'- -UGcCUUCCGC--------UCUUC----ACCGUgCCGCU- -5'
24594 3' -57.5 NC_005264.1 + 76135 0.67 0.808061
Target:  5'- cGCGGAcGGCGGcaAAGaccGcGCGCGGCGAg -3'
miRNA:   3'- -UGCCUuCCGCUc-UUCa--C-CGUGCCGCU- -5'
24594 3' -57.5 NC_005264.1 + 136231 0.67 0.807192
Target:  5'- -gGGAGGGCc-GAGGUGGCgacggacACGGCu- -3'
miRNA:   3'- ugCCUUCCGcuCUUCACCG-------UGCCGcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.