miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24594 3' -57.5 NC_005264.1 + 47077 1.09 0.002421
Target:  5'- gACGGAAGGCGAGAAGUGGCACGGCGAg -3'
miRNA:   3'- -UGCCUUCCGCUCUUCACCGUGCCGCU- -5'
24594 3' -57.5 NC_005264.1 + 123552 0.83 0.127395
Target:  5'- cGCGGAGGGgGAGggGUGGUcuuCGGCGu -3'
miRNA:   3'- -UGCCUUCCgCUCuuCACCGu--GCCGCu -5'
24594 3' -57.5 NC_005264.1 + 4525 0.83 0.127395
Target:  5'- cGCGGAGGGgGAGggGUGGUcuuCGGCGu -3'
miRNA:   3'- -UGCCUUCCgCUCuuCACCGu--GCCGCu -5'
24594 3' -57.5 NC_005264.1 + 150208 0.82 0.152186
Target:  5'- cCGGAGGGCGAGcGAGUGGgACGGgGGg -3'
miRNA:   3'- uGCCUUCCGCUC-UUCACCgUGCCgCU- -5'
24594 3' -57.5 NC_005264.1 + 31181 0.82 0.152186
Target:  5'- cCGGAGGGCGAGcGAGUGGgACGGgGGg -3'
miRNA:   3'- uGCCUUCCGCUC-UUCACCgUGCCgCU- -5'
24594 3' -57.5 NC_005264.1 + 121917 0.78 0.242634
Target:  5'- cGCGGcgcGGCGGGGAG-GGCgACGGCGAg -3'
miRNA:   3'- -UGCCuu-CCGCUCUUCaCCG-UGCCGCU- -5'
24594 3' -57.5 NC_005264.1 + 2891 0.78 0.242634
Target:  5'- cGCGGcgcGGCGGGGAG-GGCgACGGCGAg -3'
miRNA:   3'- -UGCCuu-CCGCUCUUCaCCG-UGCCGCU- -5'
24594 3' -57.5 NC_005264.1 + 48667 0.78 0.272926
Target:  5'- cACGGggGGCGAGGAGaucugGGCGCGagucugcucgucGCGGu -3'
miRNA:   3'- -UGCCuuCCGCUCUUCa----CCGUGC------------CGCU- -5'
24594 3' -57.5 NC_005264.1 + 5263 0.78 0.272926
Target:  5'- cCGGGAGGCGAGucGcGGCcggACGGCGGg -3'
miRNA:   3'- uGCCUUCCGCUCuuCaCCG---UGCCGCU- -5'
24594 3' -57.5 NC_005264.1 + 124290 0.78 0.272926
Target:  5'- cCGGGAGGCGAGucGcGGCcggACGGCGGg -3'
miRNA:   3'- uGCCUUCCGCUCuuCaCCG---UGCCGCU- -5'
24594 3' -57.5 NC_005264.1 + 43210 0.77 0.299288
Target:  5'- gGCGGggGG-GGGggG-GGCuACGGCGGg -3'
miRNA:   3'- -UGCCuuCCgCUCuuCaCCG-UGCCGCU- -5'
24594 3' -57.5 NC_005264.1 + 162237 0.77 0.299288
Target:  5'- gGCGGggGG-GGGggG-GGCuACGGCGGg -3'
miRNA:   3'- -UGCCuuCCgCUCuuCaCCG-UGCCGCU- -5'
24594 3' -57.5 NC_005264.1 + 22766 0.77 0.30618
Target:  5'- aGCGGcGGGCaauGAGG-GGCGCGGCGAc -3'
miRNA:   3'- -UGCCuUCCGcu-CUUCaCCGUGCCGCU- -5'
24594 3' -57.5 NC_005264.1 + 79037 0.76 0.334953
Target:  5'- gGCGuGGAGGCGAGGAGUGacaacUACGGCGu -3'
miRNA:   3'- -UGC-CUUCCGCUCUUCACc----GUGCCGCu -5'
24594 3' -57.5 NC_005264.1 + 154808 0.76 0.350065
Target:  5'- gGCGGAGGGCGc--GGUGGCGCcgucguGGCGGg -3'
miRNA:   3'- -UGCCUUCCGCucuUCACCGUG------CCGCU- -5'
24594 3' -57.5 NC_005264.1 + 35782 0.76 0.350065
Target:  5'- gGCGGAGGGCGc--GGUGGCGCcgucguGGCGGg -3'
miRNA:   3'- -UGCCUUCCGCucuUCACCGUG------CCGCU- -5'
24594 3' -57.5 NC_005264.1 + 84911 0.76 0.3578
Target:  5'- -gGGAGGGCGGGAAGagccaGGCGCGG-GAc -3'
miRNA:   3'- ugCCUUCCGCUCUUCa----CCGUGCCgCU- -5'
24594 3' -57.5 NC_005264.1 + 28024 0.75 0.381718
Target:  5'- uCGG-GGGCGGGAGGUcuuccGGCGCGcGCGAc -3'
miRNA:   3'- uGCCuUCCGCUCUUCA-----CCGUGC-CGCU- -5'
24594 3' -57.5 NC_005264.1 + 117828 0.74 0.450469
Target:  5'- aACGGGuu-CGAGggGaGGCGCGGCGGa -3'
miRNA:   3'- -UGCCUuccGCUCuuCaCCGUGCCGCU- -5'
24594 3' -57.5 NC_005264.1 + 100445 0.71 0.591697
Target:  5'- aGCGGAGGGCGcAGGucaaUGGCccaaguucgcugucGCGGCGGc -3'
miRNA:   3'- -UGCCUUCCGC-UCUuc--ACCG--------------UGCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.