miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24594 5' -62.2 NC_005264.1 + 147090 0.66 0.699987
Target:  5'- cGCUCGCgCGCacacauaaucaaGCCaggCC-GCCGUGCCGc -3'
miRNA:   3'- -CGAGCG-GCG------------CGGg--GGaUGGUACGGCc -5'
24594 5' -62.2 NC_005264.1 + 142592 0.66 0.699987
Target:  5'- gGCcgCGCCGCaaCCCCUGCCcacccgucacGCgCGGg -3'
miRNA:   3'- -CGa-GCGGCGcgGGGGAUGGua--------CG-GCC- -5'
24594 5' -62.2 NC_005264.1 + 143923 0.66 0.699987
Target:  5'- aGCUCuCCGCuagGCCggcuugCCUACCAgcccaaGCCGGa -3'
miRNA:   3'- -CGAGcGGCG---CGGg-----GGAUGGUa-----CGGCC- -5'
24594 5' -62.2 NC_005264.1 + 121018 0.66 0.699987
Target:  5'- ---aGCCGCGCUCCCgGCgAUGUacgUGGa -3'
miRNA:   3'- cgagCGGCGCGGGGGaUGgUACG---GCC- -5'
24594 5' -62.2 NC_005264.1 + 86697 0.66 0.690443
Target:  5'- aCUCGCCGCGCgcggUCUUUGCC--GCCGu -3'
miRNA:   3'- cGAGCGGCGCG----GGGGAUGGuaCGGCc -5'
24594 5' -62.2 NC_005264.1 + 11694 0.66 0.690443
Target:  5'- uCUCGUUugGCGUCUCC-GCCAUGCCu- -3'
miRNA:   3'- cGAGCGG--CGCGGGGGaUGGUACGGcc -5'
24594 5' -62.2 NC_005264.1 + 36730 0.66 0.690443
Target:  5'- aGC-CGCCGCGCaUUCCUugCccGCCu- -3'
miRNA:   3'- -CGaGCGGCGCG-GGGGAugGuaCGGcc -5'
24594 5' -62.2 NC_005264.1 + 56239 0.66 0.680856
Target:  5'- cGUaCGCCGCGaCCCCaaagcCCAUGCgGu -3'
miRNA:   3'- -CGaGCGGCGC-GGGGgau--GGUACGgCc -5'
24594 5' -62.2 NC_005264.1 + 65061 0.66 0.671233
Target:  5'- --aCGCCGCGCCgCCCauCCAU-CCGu -3'
miRNA:   3'- cgaGCGGCGCGG-GGGauGGUAcGGCc -5'
24594 5' -62.2 NC_005264.1 + 85789 0.66 0.671233
Target:  5'- aGCUCG-CGCGCCUCUU-CCggGUCGu -3'
miRNA:   3'- -CGAGCgGCGCGGGGGAuGGuaCGGCc -5'
24594 5' -62.2 NC_005264.1 + 103839 0.66 0.661581
Target:  5'- cGCUgagCGCCaaGCUUCUggGCCcgGCCGGg -3'
miRNA:   3'- -CGA---GCGGcgCGGGGGa-UGGuaCGGCC- -5'
24594 5' -62.2 NC_005264.1 + 62743 0.66 0.661581
Target:  5'- cGCgUCGUCGCugaGCCCCgCggccGCCAUGCUa- -3'
miRNA:   3'- -CG-AGCGGCG---CGGGG-Ga---UGGUACGGcc -5'
24594 5' -62.2 NC_005264.1 + 103965 0.66 0.661581
Target:  5'- cGCguggCGCUGCGCaaCCCUACg--GCCGa -3'
miRNA:   3'- -CGa---GCGGCGCGg-GGGAUGguaCGGCc -5'
24594 5' -62.2 NC_005264.1 + 56083 0.67 0.642222
Target:  5'- cGCUgaCGCCGCGUCUUgUG-CGUGCCGc -3'
miRNA:   3'- -CGA--GCGGCGCGGGGgAUgGUACGGCc -5'
24594 5' -62.2 NC_005264.1 + 26898 0.67 0.642222
Target:  5'- aUUCGCU-CGCCCCCggccGCCuGUGCCa- -3'
miRNA:   3'- cGAGCGGcGCGGGGGa---UGG-UACGGcc -5'
24594 5' -62.2 NC_005264.1 + 59125 0.67 0.642222
Target:  5'- cGCUgaUGCCGCGCCgCCgcuCCAcugGCCc- -3'
miRNA:   3'- -CGA--GCGGCGCGGgGGau-GGUa--CGGcc -5'
24594 5' -62.2 NC_005264.1 + 95872 0.67 0.632528
Target:  5'- uCUUGCCGUGCCgCCUgggcACCAaaaacacGCUGGu -3'
miRNA:   3'- cGAGCGGCGCGGgGGA----UGGUa------CGGCC- -5'
24594 5' -62.2 NC_005264.1 + 31608 0.67 0.632528
Target:  5'- gGCgaggCGgCGCGCaucgCCCUgcgACCAUGCCucGGg -3'
miRNA:   3'- -CGa---GCgGCGCGg---GGGA---UGGUACGG--CC- -5'
24594 5' -62.2 NC_005264.1 + 86431 0.67 0.632528
Target:  5'- uUUCGCCGgGCgCCCUauguGCCAcGCCc- -3'
miRNA:   3'- cGAGCGGCgCGgGGGA----UGGUaCGGcc -5'
24594 5' -62.2 NC_005264.1 + 150635 0.67 0.632528
Target:  5'- gGCgaggCGgCGCGCaucgCCCUgcgACCAUGCCucGGg -3'
miRNA:   3'- -CGa---GCgGCGCGg---GGGA---UGGUACGG--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.