miRNA display CGI


Results 21 - 40 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24600 5' -55.9 NC_005264.1 + 31615 0.73 0.551853
Target:  5'- -----cGGCGCGCAUCGCCcugcgaccauGCCUCGg -3'
miRNA:   3'- gauagaCCGCGUGUGGCGGu---------UGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 33338 0.69 0.808143
Target:  5'- --cUCcGGCGCcgccaaacccuGCGCCGCCGcaAUCUCGa -3'
miRNA:   3'- gauAGaCCGCG-----------UGUGGCGGU--UGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 34130 0.66 0.912359
Target:  5'- -cGUCgaGGCGCGagcCCGCCucccccaaGGCCUCGc -3'
miRNA:   3'- gaUAGa-CCGCGUgu-GGCGG--------UUGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 35802 0.69 0.808143
Target:  5'- -cGUCgUGGCGgGCGCCucuGCCGGCCcCGc -3'
miRNA:   3'- gaUAG-ACCGCgUGUGG---CGGUUGGaGC- -5'
24600 5' -55.9 NC_005264.1 + 36561 0.69 0.771817
Target:  5'- ---cCUGGCGCcgACcuCCGCCAAguCCUCGc -3'
miRNA:   3'- gauaGACCGCG--UGu-GGCGGUU--GGAGC- -5'
24600 5' -55.9 NC_005264.1 + 36981 0.72 0.643084
Target:  5'- ---gCUGGCGCcauaguCGCCGCC-GCCUCc -3'
miRNA:   3'- gauaGACCGCGu-----GUGGCGGuUGGAGc -5'
24600 5' -55.9 NC_005264.1 + 38872 0.67 0.879874
Target:  5'- cCUcgCgGGUGUACACCGCCAAaggCa -3'
miRNA:   3'- -GAuaGaCCGCGUGUGGCGGUUggaGc -5'
24600 5' -55.9 NC_005264.1 + 44922 0.67 0.886826
Target:  5'- -gAUCcGGCGCAagcgaACCGCgGGCC-CGu -3'
miRNA:   3'- gaUAGaCCGCGUg----UGGCGgUUGGaGC- -5'
24600 5' -55.9 NC_005264.1 + 45571 0.66 0.923724
Target:  5'- gUGUC-GGCGCGCACgaGUC--CCUCGg -3'
miRNA:   3'- gAUAGaCCGCGUGUGg-CGGuuGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 45843 0.66 0.900054
Target:  5'- -gGUCUcGGUGCACcaacgacacuccGCCGCCAuaguagUCUCGg -3'
miRNA:   3'- gaUAGA-CCGCGUG------------UGGCGGUu-----GGAGC- -5'
24600 5' -55.9 NC_005264.1 + 46422 0.69 0.799278
Target:  5'- -----aGGCuGCACGCCGCCcuGCgCUCGa -3'
miRNA:   3'- gauagaCCG-CGUGUGGCGGu-UG-GAGC- -5'
24600 5' -55.9 NC_005264.1 + 47290 0.68 0.833753
Target:  5'- ---cCUGGCGUACACguaCGCCAuggGCC-CGa -3'
miRNA:   3'- gauaGACCGCGUGUG---GCGGU---UGGaGC- -5'
24600 5' -55.9 NC_005264.1 + 48338 0.74 0.493165
Target:  5'- cCUGgggagUUGGCGCACGCCauGgCGGCCUCGu -3'
miRNA:   3'- -GAUa----GACCGCGUGUGG--CgGUUGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 49582 0.76 0.393988
Target:  5'- --uUCUcGGCGCACGCCGCCGGCgaCc -3'
miRNA:   3'- gauAGA-CCGCGUGUGGCGGUUGgaGc -5'
24600 5' -55.9 NC_005264.1 + 54164 1.08 0.003392
Target:  5'- aCUAUCUGGCGCACACCGCCAACCUCGc -3'
miRNA:   3'- -GAUAGACCGCGUGUGGCGGUUGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 54442 0.69 0.799278
Target:  5'- ---gCUGGCGCGggggaugccCACCGCCGAgCUgGu -3'
miRNA:   3'- gauaGACCGCGU---------GUGGCGGUUgGAgC- -5'
24600 5' -55.9 NC_005264.1 + 55640 0.67 0.879874
Target:  5'- ------cGCGCGCGCCGCC-GCCUUu -3'
miRNA:   3'- gauagacCGCGUGUGGCGGuUGGAGc -5'
24600 5' -55.9 NC_005264.1 + 56319 0.66 0.923724
Target:  5'- -----cGGcCGCGCuGCCGCCGucgcgcaccGCCUCGu -3'
miRNA:   3'- gauagaCC-GCGUG-UGGCGGU---------UGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 56411 0.66 0.91816
Target:  5'- aUAUC-GaGCGCgGCGCCGUCgAGCUUCGg -3'
miRNA:   3'- gAUAGaC-CGCG-UGUGGCGG-UUGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 56593 0.67 0.879874
Target:  5'- --uUCUGGCGCuacGCGCgGCCcAUCUgGg -3'
miRNA:   3'- gauAGACCGCG---UGUGgCGGuUGGAgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.