miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24600 5' -55.9 NC_005264.1 + 155 0.67 0.886826
Target:  5'- -----cGGCGCGCAgCgCGCCGACCg-- -3'
miRNA:   3'- gauagaCCGCGUGU-G-GCGGUUGGagc -5'
24600 5' -55.9 NC_005264.1 + 3964 0.67 0.886826
Target:  5'- ---cCUGGC-CGCGCCGgCCGGCUUUa -3'
miRNA:   3'- gauaGACCGcGUGUGGC-GGUUGGAGc -5'
24600 5' -55.9 NC_005264.1 + 6407 0.69 0.808143
Target:  5'- aUAUCgaGGCGaucacCGCCGCCAGCCg-- -3'
miRNA:   3'- gAUAGa-CCGCgu---GUGGCGGUUGGagc -5'
24600 5' -55.9 NC_005264.1 + 6843 0.68 0.849928
Target:  5'- aCUA--UGGCGC-CAgCGCgCAACCUCu -3'
miRNA:   3'- -GAUagACCGCGuGUgGCG-GUUGGAGc -5'
24600 5' -55.9 NC_005264.1 + 8712 0.67 0.879874
Target:  5'- --cUCUGcGCGCGCgugGCCGCCGuuucGgCUCGc -3'
miRNA:   3'- gauAGAC-CGCGUG---UGGCGGU----UgGAGC- -5'
24600 5' -55.9 NC_005264.1 + 9455 0.66 0.91759
Target:  5'- ---cCUGGguggggucucgaaCGUACuCUGCCGACCUCGc -3'
miRNA:   3'- gauaGACC-------------GCGUGuGGCGGUUGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 9805 0.67 0.893553
Target:  5'- -aAUCUGGaggucggcCGCACAUaaUGCCAuauCCUCGu -3'
miRNA:   3'- gaUAGACC--------GCGUGUG--GCGGUu--GGAGC- -5'
24600 5' -55.9 NC_005264.1 + 10923 0.66 0.900054
Target:  5'- gCUcgUUGGCGuCAUggaGCCGCCGuccCCUCc -3'
miRNA:   3'- -GAuaGACCGC-GUG---UGGCGGUu--GGAGc -5'
24600 5' -55.9 NC_005264.1 + 11760 0.69 0.806383
Target:  5'- -cGUCUGGCGCggcgaaacgguugACGCUcucguagGCCgAGCCUCGc -3'
miRNA:   3'- gaUAGACCGCG-------------UGUGG-------CGG-UUGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 12127 0.68 0.825389
Target:  5'- --cUUUGGCGgGCAgccCCGCCGagagcccuGCCUCGc -3'
miRNA:   3'- gauAGACCGCgUGU---GGCGGU--------UGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 12201 0.66 0.91816
Target:  5'- -gGUCgcagGGCgauGCGCGCCGCCucGCCa-- -3'
miRNA:   3'- gaUAGa---CCG---CGUGUGGCGGu-UGGagc -5'
24600 5' -55.9 NC_005264.1 + 12968 0.78 0.323078
Target:  5'- -----cGGCGCGCGCCGCCGACgaCGa -3'
miRNA:   3'- gauagaCCGCGUGUGGCGGUUGgaGC- -5'
24600 5' -55.9 NC_005264.1 + 13421 0.67 0.879874
Target:  5'- -----cGGCGCGCgACCGCCGccGCCgagacgCGa -3'
miRNA:   3'- gauagaCCGCGUG-UGGCGGU--UGGa-----GC- -5'
24600 5' -55.9 NC_005264.1 + 14338 0.68 0.833753
Target:  5'- -----cGGCGCuCGCCGCCAACg-CGa -3'
miRNA:   3'- gauagaCCGCGuGUGGCGGUUGgaGC- -5'
24600 5' -55.9 NC_005264.1 + 17847 0.66 0.923724
Target:  5'- -cAUCUcGCGCGCGCUGuUCGACCgCGu -3'
miRNA:   3'- gaUAGAcCGCGUGUGGC-GGUUGGaGC- -5'
24600 5' -55.9 NC_005264.1 + 18140 0.66 0.900054
Target:  5'- gCUGUCUGGCGCGaGCgGCUAagagacagGCUugUCGg -3'
miRNA:   3'- -GAUAGACCGCGUgUGgCGGU--------UGG--AGC- -5'
24600 5' -55.9 NC_005264.1 + 20781 0.67 0.857725
Target:  5'- -cGUCuUGGUGCGCACaGCUuauuCCUCGu -3'
miRNA:   3'- gaUAG-ACCGCGUGUGgCGGuu--GGAGC- -5'
24600 5' -55.9 NC_005264.1 + 29898 0.66 0.923724
Target:  5'- ----aUGGCgGCGaaacgcccUACUGCCAGCCUCa -3'
miRNA:   3'- gauagACCG-CGU--------GUGGCGGUUGGAGc -5'
24600 5' -55.9 NC_005264.1 + 30840 0.73 0.582006
Target:  5'- -aAUCUGGCGCcggucggccCACCGCCAccgGCCUg- -3'
miRNA:   3'- gaUAGACCGCGu--------GUGGCGGU---UGGAgc -5'
24600 5' -55.9 NC_005264.1 + 31186 0.69 0.762404
Target:  5'- -gGUCUGGCgGCggGCACCGCaGACCgaggCGu -3'
miRNA:   3'- gaUAGACCG-CG--UGUGGCGgUUGGa---GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.