miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24600 5' -55.9 NC_005264.1 + 54164 1.08 0.003392
Target:  5'- aCUAUCUGGCGCACACCGCCAACCUCGc -3'
miRNA:   3'- -GAUAGACCGCGUGUGGCGGUUGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 12968 0.78 0.323078
Target:  5'- -----cGGCGCGCGCCGCCGACgaCGa -3'
miRNA:   3'- gauagaCCGCGUGUGGCGGUUGgaGC- -5'
24600 5' -55.9 NC_005264.1 + 49582 0.76 0.393988
Target:  5'- --uUCUcGGCGCACGCCGCCGGCgaCc -3'
miRNA:   3'- gauAGA-CCGCGUGUGGCGGUUGgaGc -5'
24600 5' -55.9 NC_005264.1 + 89791 0.76 0.402466
Target:  5'- --cUCUGGcCGCAUACCGCCGGCgCUUu -3'
miRNA:   3'- gauAGACC-GCGUGUGGCGGUUG-GAGc -5'
24600 5' -55.9 NC_005264.1 + 134782 0.75 0.446536
Target:  5'- -gGUCgcaUGGCGCACAUCGCgAAuCCUCGc -3'
miRNA:   3'- gaUAG---ACCGCGUGUGGCGgUU-GGAGC- -5'
24600 5' -55.9 NC_005264.1 + 48338 0.74 0.493165
Target:  5'- cCUGgggagUUGGCGCACGCCauGgCGGCCUCGu -3'
miRNA:   3'- -GAUa----GACCGCGUGUGG--CgGUUGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 31615 0.73 0.551853
Target:  5'- -----cGGCGCGCAUCGCCcugcgaccauGCCUCGg -3'
miRNA:   3'- gauagaCCGCGUGUGGCGGu---------UGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 146544 0.73 0.551853
Target:  5'- -----cGGCGCACAUCcCCAGCCUCu -3'
miRNA:   3'- gauagaCCGCGUGUGGcGGUUGGAGc -5'
24600 5' -55.9 NC_005264.1 + 150642 0.73 0.551853
Target:  5'- -----cGGCGCGCAUCGCCcugcgaccauGCCUCGg -3'
miRNA:   3'- gauagaCCGCGUGUGGCGGu---------UGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 125039 0.73 0.571911
Target:  5'- -cGUCggcGGCGCGCcucuucuCCGCCGcucGCCUCGa -3'
miRNA:   3'- gaUAGa--CCGCGUGu------GGCGGU---UGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 79546 0.73 0.571911
Target:  5'- -gAUCUGGC-CGCACCGCggcaaGGCCUUGc -3'
miRNA:   3'- gaUAGACCGcGUGUGGCGg----UUGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 30840 0.73 0.582006
Target:  5'- -aAUCUGGCGCcggucggccCACCGCCAccgGCCUg- -3'
miRNA:   3'- gaUAGACCGCGu--------GUGGCGGU---UGGAgc -5'
24600 5' -55.9 NC_005264.1 + 67479 0.72 0.608404
Target:  5'- -aGUUUGGCGgcaCGCGCCGCCcgucggccccauuGCCUCGg -3'
miRNA:   3'- gaUAGACCGC---GUGUGGCGGu------------UGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 96634 0.72 0.642063
Target:  5'- uUcgCUGGCcgcggagGCGCACCGCCcGCCgaugCGg -3'
miRNA:   3'- gAuaGACCG-------CGUGUGGCGGuUGGa---GC- -5'
24600 5' -55.9 NC_005264.1 + 156008 0.72 0.643084
Target:  5'- ---gCUGGCGCcauaguCGCCGCC-GCCUCc -3'
miRNA:   3'- gauaGACCGCGu-----GUGGCGGuUGGAGc -5'
24600 5' -55.9 NC_005264.1 + 36981 0.72 0.643084
Target:  5'- ---gCUGGCGCcauaguCGCCGCC-GCCUCc -3'
miRNA:   3'- gauaGACCGCGu-----GUGGCGGuUGGAGc -5'
24600 5' -55.9 NC_005264.1 + 131994 0.71 0.673609
Target:  5'- -----cGGCGCGcCGCCGCCGACgaCGa -3'
miRNA:   3'- gauagaCCGCGU-GUGGCGGUUGgaGC- -5'
24600 5' -55.9 NC_005264.1 + 74305 0.71 0.703831
Target:  5'- -gGUCUGGCGCgcgGCAUgGCCAACgagUCGu -3'
miRNA:   3'- gaUAGACCGCG---UGUGgCGGUUGg--AGC- -5'
24600 5' -55.9 NC_005264.1 + 74627 0.7 0.723693
Target:  5'- -gAUCuUGGCGCGCuACCGUCAGCg-CGa -3'
miRNA:   3'- gaUAG-ACCGCGUG-UGGCGGUUGgaGC- -5'
24600 5' -55.9 NC_005264.1 + 108605 0.7 0.733511
Target:  5'- ---gUUGGCGCGCgggGCCGCCucgacacaGGCCUCu -3'
miRNA:   3'- gauaGACCGCGUG---UGGCGG--------UUGGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.