miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24600 5' -55.9 NC_005264.1 + 29898 0.66 0.923724
Target:  5'- ----aUGGCgGCGaaacgcccUACUGCCAGCCUCa -3'
miRNA:   3'- gauagACCG-CGU--------GUGGCGGUUGGAGc -5'
24600 5' -55.9 NC_005264.1 + 139430 0.66 0.912359
Target:  5'- ---gCUGGCGUACGCgUGCuCGGCCgUCa -3'
miRNA:   3'- gauaGACCGCGUGUG-GCG-GUUGG-AGc -5'
24600 5' -55.9 NC_005264.1 + 144788 0.66 0.906323
Target:  5'- ---cCUGGCucGCgGCGCCGCC-GCUUCGc -3'
miRNA:   3'- gauaGACCG--CG-UGUGGCGGuUGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 148779 0.66 0.902589
Target:  5'- -aGUCUGGCGUGCAcguucccacccggccCCGCCAcguCCggaCGa -3'
miRNA:   3'- gaUAGACCGCGUGU---------------GGCGGUu--GGa--GC- -5'
24600 5' -55.9 NC_005264.1 + 144431 0.66 0.900054
Target:  5'- -----gGGCGCGcCugCGCCGGCCggaaCGg -3'
miRNA:   3'- gauagaCCGCGU-GugGCGGUUGGa---GC- -5'
24600 5' -55.9 NC_005264.1 + 93612 0.66 0.900054
Target:  5'- --cUCUGGCGCAgcugGCCGCUGAgcuguCCUCc -3'
miRNA:   3'- gauAGACCGCGUg---UGGCGGUU-----GGAGc -5'
24600 5' -55.9 NC_005264.1 + 18140 0.66 0.900054
Target:  5'- gCUGUCUGGCGCGaGCgGCUAagagacagGCUugUCGg -3'
miRNA:   3'- -GAUAGACCGCGUgUGgCGGU--------UGG--AGC- -5'
24600 5' -55.9 NC_005264.1 + 10923 0.66 0.900054
Target:  5'- gCUcgUUGGCGuCAUggaGCCGCCGuccCCUCc -3'
miRNA:   3'- -GAuaGACCGC-GUG---UGGCGGUu--GGAGc -5'
24600 5' -55.9 NC_005264.1 + 45843 0.66 0.900054
Target:  5'- -gGUCUcGGUGCACcaacgacacuccGCCGCCAuaguagUCUCGg -3'
miRNA:   3'- gaUAGA-CCGCGUG------------UGGCGGUu-----GGAGC- -5'
24600 5' -55.9 NC_005264.1 + 34130 0.66 0.912359
Target:  5'- -cGUCgaGGCGCGagcCCGCCucccccaaGGCCUCGc -3'
miRNA:   3'- gaUAGa-CCGCGUgu-GGCGG--------UUGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 81076 0.66 0.916445
Target:  5'- gUAUgCUGcGCGCACgucucgugcuucuuGCCGCCAGaaUCGg -3'
miRNA:   3'- gAUA-GAC-CGCGUG--------------UGGCGGUUggAGC- -5'
24600 5' -55.9 NC_005264.1 + 9455 0.66 0.91759
Target:  5'- ---cCUGGguggggucucgaaCGUACuCUGCCGACCUCGc -3'
miRNA:   3'- gauaGACC-------------GCGUGuGGCGGUUGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 73708 0.66 0.923724
Target:  5'- ---cCUGGCGCcagUACCGaCGGCCUUGc -3'
miRNA:   3'- gauaGACCGCGu--GUGGCgGUUGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 17847 0.66 0.923724
Target:  5'- -cAUCUcGCGCGCGCUGuUCGACCgCGu -3'
miRNA:   3'- gaUAGAcCGCGUGUGGC-GGUUGGaGC- -5'
24600 5' -55.9 NC_005264.1 + 129961 0.66 0.923724
Target:  5'- -aGUCUGG-GCGC-CUGCCuccaagguucACCUCGa -3'
miRNA:   3'- gaUAGACCgCGUGuGGCGGu---------UGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 130772 0.66 0.920414
Target:  5'- gCUAg-UGGC-CACGCUGCCcgacuauccaagaggAGCCUCGa -3'
miRNA:   3'- -GAUagACCGcGUGUGGCGG---------------UUGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 132763 0.66 0.91816
Target:  5'- uCUGUCcgGGCGCgGCGgCGCCGACg--- -3'
miRNA:   3'- -GAUAGa-CCGCG-UGUgGCGGUUGgagc -5'
24600 5' -55.9 NC_005264.1 + 12201 0.66 0.91816
Target:  5'- -gGUCgcagGGCgauGCGCGCCGCCucGCCa-- -3'
miRNA:   3'- gaUAGa---CCG---CGUGUGGCGGu-UGGagc -5'
24600 5' -55.9 NC_005264.1 + 71774 0.66 0.91816
Target:  5'- cCUG-CUGGCGC-CGuuGCagaagcGCCUCGg -3'
miRNA:   3'- -GAUaGACCGCGuGUggCGgu----UGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 60727 0.66 0.91759
Target:  5'- ---cCUGGCGCAUguggaugguagagGCCGCCuguuacaucGugCUCGu -3'
miRNA:   3'- gauaGACCGCGUG-------------UGGCGG---------UugGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.