miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24600 5' -55.9 NC_005264.1 + 54164 1.08 0.003392
Target:  5'- aCUAUCUGGCGCACACCGCCAACCUCGc -3'
miRNA:   3'- -GAUAGACCGCGUGUGGCGGUUGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 46422 0.69 0.799278
Target:  5'- -----aGGCuGCACGCCGCCcuGCgCUCGa -3'
miRNA:   3'- gauagaCCG-CGUGUGGCGGu-UG-GAGC- -5'
24600 5' -55.9 NC_005264.1 + 33338 0.69 0.808143
Target:  5'- --cUCcGGCGCcgccaaacccuGCGCCGCCGcaAUCUCGa -3'
miRNA:   3'- gauAGaCCGCG-----------UGUGGCGGU--UGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 81445 0.66 0.92905
Target:  5'- -----cGGCGCGCACCcGCaugcAUCUCGg -3'
miRNA:   3'- gauagaCCGCGUGUGG-CGgu--UGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 48338 0.74 0.493165
Target:  5'- cCUGgggagUUGGCGCACGCCauGgCGGCCUCGu -3'
miRNA:   3'- -GAUa----GACCGCGUGUGG--CgGUUGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 146544 0.73 0.551853
Target:  5'- -----cGGCGCACAUCcCCAGCCUCu -3'
miRNA:   3'- gauagaCCGCGUGUGGcGGUUGGAGc -5'
24600 5' -55.9 NC_005264.1 + 79546 0.73 0.571911
Target:  5'- -gAUCUGGC-CGCACCGCggcaaGGCCUUGc -3'
miRNA:   3'- gaUAGACCGcGUGUGGCGg----UUGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 30840 0.73 0.582006
Target:  5'- -aAUCUGGCGCcggucggccCACCGCCAccgGCCUg- -3'
miRNA:   3'- gaUAGACCGCGu--------GUGGCGGU---UGGAgc -5'
24600 5' -55.9 NC_005264.1 + 108605 0.7 0.733511
Target:  5'- ---gUUGGCGCGCgggGCCGCCucgacacaGGCCUCu -3'
miRNA:   3'- gauaGACCGCGUG---UGGCGG--------UUGGAGc -5'
24600 5' -55.9 NC_005264.1 + 155588 0.69 0.771817
Target:  5'- ---cCUGGCGCcgACcuCCGCCAAguCCUCGc -3'
miRNA:   3'- gauaGACCGCG--UGu-GGCGGUU--GGAGC- -5'
24600 5' -55.9 NC_005264.1 + 98019 0.7 0.743241
Target:  5'- ----aUGGUGCugGCCGacuuCAGCCUCGc -3'
miRNA:   3'- gauagACCGCGugUGGCg---GUUGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 131994 0.71 0.673609
Target:  5'- -----cGGCGCGcCGCCGCCGACgaCGa -3'
miRNA:   3'- gauagaCCGCGU-GUGGCGGUUGgaGC- -5'
24600 5' -55.9 NC_005264.1 + 49582 0.76 0.393988
Target:  5'- --uUCUcGGCGCACGCCGCCGGCgaCc -3'
miRNA:   3'- gauAGA-CCGCGUGUGGCGGUUGgaGc -5'
24600 5' -55.9 NC_005264.1 + 59954 0.69 0.762404
Target:  5'- uUAUCaUGGUGUccGCGCCGCuCAGCCacgCGg -3'
miRNA:   3'- gAUAG-ACCGCG--UGUGGCG-GUUGGa--GC- -5'
24600 5' -55.9 NC_005264.1 + 89791 0.76 0.402466
Target:  5'- --cUCUGGcCGCAUACCGCCGGCgCUUu -3'
miRNA:   3'- gauAGACC-GCGUGUGGCGGUUG-GAGc -5'
24600 5' -55.9 NC_005264.1 + 156008 0.72 0.643084
Target:  5'- ---gCUGGCGCcauaguCGCCGCC-GCCUCc -3'
miRNA:   3'- gauaGACCGCGu-----GUGGCGGuUGGAGc -5'
24600 5' -55.9 NC_005264.1 + 31186 0.69 0.762404
Target:  5'- -gGUCUGGCgGCggGCACCGCaGACCgaggCGu -3'
miRNA:   3'- gaUAGACCG-CG--UGUGGCGgUUGGa---GC- -5'
24600 5' -55.9 NC_005264.1 + 11760 0.69 0.806383
Target:  5'- -cGUCUGGCGCggcgaaacgguugACGCUcucguagGCCgAGCCUCGc -3'
miRNA:   3'- gaUAGACCGCG-------------UGUGG-------CGG-UUGGAGC- -5'
24600 5' -55.9 NC_005264.1 + 134782 0.75 0.446536
Target:  5'- -gGUCgcaUGGCGCACAUCGCgAAuCCUCGc -3'
miRNA:   3'- gaUAG---ACCGCGUGUGGCGgUU-GGAGC- -5'
24600 5' -55.9 NC_005264.1 + 150642 0.73 0.551853
Target:  5'- -----cGGCGCGCAUCGCCcugcgaccauGCCUCGg -3'
miRNA:   3'- gauagaCCGCGUGUGGCGGu---------UGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.