miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24601 5' -59.4 NC_005264.1 + 124367 0.66 0.76216
Target:  5'- --cGAAGCgGUCGCucgucccggGCGGCCuCgCGGAUg -3'
miRNA:   3'- aauCUUCG-CAGCG---------CGCCGGuG-GCCUA- -5'
24601 5' -59.4 NC_005264.1 + 138423 0.66 0.765912
Target:  5'- -gAGAAcgugcuuuGCGUCGCGCuGcucgcgaucuaccucGCCGCCGGGg -3'
miRNA:   3'- aaUCUU--------CGCAGCGCG-C---------------CGGUGGCCUa -5'
24601 5' -59.4 NC_005264.1 + 39180 0.66 0.765912
Target:  5'- cUGGgcGCGcgacucuaccgcgcaUCGCuucagagucuGCGGCUGCCGGAUa -3'
miRNA:   3'- aAUCuuCGC---------------AGCG----------CGCCGGUGGCCUA- -5'
24601 5' -59.4 NC_005264.1 + 84153 0.7 0.494921
Target:  5'- -gGGAAGUgGUCGCaGCGcGCgCGCCGGAc -3'
miRNA:   3'- aaUCUUCG-CAGCG-CGC-CG-GUGGCCUa -5'
24601 5' -59.4 NC_005264.1 + 17137 0.67 0.694092
Target:  5'- -cGGuacGGCGUCgagggGCGCGGCUACaGGAUa -3'
miRNA:   3'- aaUCu--UCGCAG-----CGCGCCGGUGgCCUA- -5'
24601 5' -59.4 NC_005264.1 + 18582 0.67 0.713926
Target:  5'- -gAGAacucGGUGUCgGUGCGGUagcaGCCGGAg -3'
miRNA:   3'- aaUCU----UCGCAG-CGCGCCGg---UGGCCUa -5'
24601 5' -59.4 NC_005264.1 + 5060 0.66 0.723745
Target:  5'- cUGGcAGGgGUCGCaagGCGGCCAgcccguCCGGGg -3'
miRNA:   3'- aAUC-UUCgCAGCG---CGCCGGU------GGCCUa -5'
24601 5' -59.4 NC_005264.1 + 64361 0.66 0.723745
Target:  5'- -gAGGAGaugcccUCGCGCGuGCCgGCCGGGUu -3'
miRNA:   3'- aaUCUUCgc----AGCGCGC-CGG-UGGCCUA- -5'
24601 5' -59.4 NC_005264.1 + 152850 0.66 0.733487
Target:  5'- gUAGAGGCGUCaCGCGGUCuaacccacucuGCCGa-- -3'
miRNA:   3'- aAUCUUCGCAGcGCGCCGG-----------UGGCcua -5'
24601 5' -59.4 NC_005264.1 + 6208 0.67 0.674056
Target:  5'- -gAGAcGCGUccuuugacccccCGcCGCGGCCGCCGcGAg -3'
miRNA:   3'- aaUCUuCGCA------------GC-GCGCCGGUGGC-CUa -5'
24601 5' -59.4 NC_005264.1 + 1198 0.67 0.663983
Target:  5'- -cGGAccgGGCGUC-CGCGGCCAUggcugCGGGg -3'
miRNA:   3'- aaUCU---UCGCAGcGCGCCGGUG-----GCCUa -5'
24601 5' -59.4 NC_005264.1 + 102731 0.67 0.663983
Target:  5'- -cGGAaaaagucgcGGCGUUGUG-GGCCGCCGGc- -3'
miRNA:   3'- aaUCU---------UCGCAGCGCgCCGGUGGCCua -5'
24601 5' -59.4 NC_005264.1 + 38188 0.72 0.42192
Target:  5'- -gGGAcaccuAGCGUCGCGCGGCCcgauagcggcuCCGGu- -3'
miRNA:   3'- aaUCU-----UCGCAGCGCGCCGGu----------GGCCua -5'
24601 5' -59.4 NC_005264.1 + 125901 0.7 0.494921
Target:  5'- -cGGAAGCGUaagaacCGCGGcCCGCUGGAg -3'
miRNA:   3'- aaUCUUCGCAgc----GCGCC-GGUGGCCUa -5'
24601 5' -59.4 NC_005264.1 + 37577 0.69 0.552231
Target:  5'- -cGGAGGCGgcaagucUCGCgGCGGCCGCggCGGGg -3'
miRNA:   3'- aaUCUUCGC-------AGCG-CGCCGGUG--GCCUa -5'
24601 5' -59.4 NC_005264.1 + 131603 0.68 0.613402
Target:  5'- -aGGGAGCGgcgCGCGUGGgCgCGCgCGGAg -3'
miRNA:   3'- aaUCUUCGCa--GCGCGCC-G-GUG-GCCUa -5'
24601 5' -59.4 NC_005264.1 + 908 0.69 0.593214
Target:  5'- -----cGUGUCGCG-GGCCGCUGGGg -3'
miRNA:   3'- aaucuuCGCAGCGCgCCGGUGGCCUa -5'
24601 5' -59.4 NC_005264.1 + 109634 0.68 0.633646
Target:  5'- -gGGggGCG-CGacgguugcaacuCGCGGCC-CCGGAg -3'
miRNA:   3'- aaUCuuCGCaGC------------GCGCCGGuGGCCUa -5'
24601 5' -59.4 NC_005264.1 + 134804 0.68 0.64377
Target:  5'- ----cGGCGUCGCGCG--CGCCGGAa -3'
miRNA:   3'- aaucuUCGCAGCGCGCcgGUGGCCUa -5'
24601 5' -59.4 NC_005264.1 + 43681 0.67 0.663983
Target:  5'- ----cGGCGUUaagGCGGCCGCCGGGg -3'
miRNA:   3'- aaucuUCGCAGcg-CGCCGGUGGCCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.