miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24601 5' -59.4 NC_005264.1 + 111037 0.73 0.355788
Target:  5'- --cGAAGCGguggcUCGCGCGGaCuCGCCGGAc -3'
miRNA:   3'- aauCUUCGC-----AGCGCGCC-G-GUGGCCUa -5'
24601 5' -59.4 NC_005264.1 + 124087 0.66 0.723745
Target:  5'- cUGGcAGGgGUCGCaagGCGGCCAgcccguCCGGGg -3'
miRNA:   3'- aAUC-UUCgCAGCG---CGCCGGU------GGCCUa -5'
24601 5' -59.4 NC_005264.1 + 19524 0.66 0.743143
Target:  5'- -gAGAAGC-UCGgGaCGGCCGCCGc-- -3'
miRNA:   3'- aaUCUUCGcAGCgC-GCCGGUGGCcua -5'
24601 5' -59.4 NC_005264.1 + 138423 0.66 0.765912
Target:  5'- -gAGAAcgugcuuuGCGUCGCGCuGcucgcgaucuaccucGCCGCCGGGg -3'
miRNA:   3'- aaUCUU--------CGCAGCGCG-C---------------CGGUGGCCUa -5'
24601 5' -59.4 NC_005264.1 + 84153 0.7 0.494921
Target:  5'- -gGGAAGUgGUCGCaGCGcGCgCGCCGGAc -3'
miRNA:   3'- aaUCUUCG-CAGCG-CGC-CG-GUGGCCUa -5'
24601 5' -59.4 NC_005264.1 + 156604 0.69 0.552231
Target:  5'- -cGGAGGCGgcaagucUCGCgGCGGCCGCggCGGGg -3'
miRNA:   3'- aaUCUUCGC-------AGCG-CGCCGGUG--GCCUa -5'
24601 5' -59.4 NC_005264.1 + 19417 0.69 0.572136
Target:  5'- -gGGAGGCGagGCGCcggguguGGCCGCgGGGc -3'
miRNA:   3'- aaUCUUCGCagCGCG-------CCGGUGgCCUa -5'
24601 5' -59.4 NC_005264.1 + 54405 0.69 0.583158
Target:  5'- -aAGAAGUcguuGUUGCGCGGCgCGCCGa-- -3'
miRNA:   3'- aaUCUUCG----CAGCGCGCCG-GUGGCcua -5'
24601 5' -59.4 NC_005264.1 + 120225 0.67 0.663983
Target:  5'- -cGGAccgGGCGUC-CGCGGCCAUggcugCGGGg -3'
miRNA:   3'- aaUCU---UCGCAGcGCGCCGGUG-----GCCUa -5'
24601 5' -59.4 NC_005264.1 + 28025 0.67 0.709979
Target:  5'- -cGGggGCGggaggucuuccggCGCGCGcGaCGCCGGGUa -3'
miRNA:   3'- aaUCuuCGCa------------GCGCGC-CgGUGGCCUA- -5'
24601 5' -59.4 NC_005264.1 + 125235 0.67 0.674056
Target:  5'- -gAGAcGCGUccuuugacccccCGcCGCGGCCGCCGcGAg -3'
miRNA:   3'- aaUCUuCGCA------------GC-GCGCCGGUGGC-CUa -5'
24601 5' -59.4 NC_005264.1 + 162707 0.67 0.663983
Target:  5'- ----cGGCGUUaagGCGGCCGCCGGGg -3'
miRNA:   3'- aaucuUCGCAGcg-CGCCGGUGGCCUa -5'
24601 5' -59.4 NC_005264.1 + 34637 0.72 0.379716
Target:  5'- --cGggGUGUU-CGCGGCCACCGGu- -3'
miRNA:   3'- aauCuuCGCAGcGCGCCGGUGGCCua -5'
24601 5' -59.4 NC_005264.1 + 30518 0.67 0.684095
Target:  5'- -gGGAAGCGgcucUCGCGCaguuuGGCCgACCGcGGUg -3'
miRNA:   3'- aaUCUUCGC----AGCGCG-----CCGG-UGGC-CUA- -5'
24601 5' -59.4 NC_005264.1 + 157215 0.72 0.42192
Target:  5'- -gGGAcaccuAGCGUCGCGCGGCCcgauagcggcuCCGGu- -3'
miRNA:   3'- aaUCU-----UCGCAGCGCGCCGGu----------GGCCua -5'
24601 5' -59.4 NC_005264.1 + 119934 0.69 0.593214
Target:  5'- -----cGUGUCGCG-GGCCGCUGGGg -3'
miRNA:   3'- aaucuuCGCAGCGCgCCGGUGGCCUa -5'
24601 5' -59.4 NC_005264.1 + 17137 0.67 0.694092
Target:  5'- -cGGuacGGCGUCgagggGCGCGGCUACaGGAUa -3'
miRNA:   3'- aaUCu--UCGCAG-----CGCGCCGGUGgCCUA- -5'
24601 5' -59.4 NC_005264.1 + 8703 0.66 0.743143
Target:  5'- -aAGAAcucgcucugcGCG-CGCGUGGCCGCCGu-- -3'
miRNA:   3'- aaUCUU----------CGCaGCGCGCCGGUGGCcua -5'
24601 5' -59.4 NC_005264.1 + 56231 0.71 0.466824
Target:  5'- cUGGcGAGCGUCGCGCGGCUuuugucgagguGgCGGGc -3'
miRNA:   3'- aAUC-UUCGCAGCGCGCCGG-----------UgGCCUa -5'
24601 5' -59.4 NC_005264.1 + 29611 0.69 0.553222
Target:  5'- --cGAAGCGUaGCGCGGCggcgCACgGGGUa -3'
miRNA:   3'- aauCUUCGCAgCGCGCCG----GUGgCCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.