miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24601 5' -59.4 NC_005264.1 + 54362 1.02 0.003552
Target:  5'- cUUAGAAGCGUCGCGCGGCCACCGGAUc -3'
miRNA:   3'- -AAUCUUCGCAGCGCGCCGGUGGCCUA- -5'
24601 5' -59.4 NC_005264.1 + 48393 0.76 0.240733
Target:  5'- --uGggGCGUCGgGCGGCgGCCaGGAg -3'
miRNA:   3'- aauCuuCGCAGCgCGCCGgUGG-CCUa -5'
24601 5' -59.4 NC_005264.1 + 111037 0.73 0.355788
Target:  5'- --cGAAGCGguggcUCGCGCGGaCuCGCCGGAc -3'
miRNA:   3'- aauCUUCGC-----AGCGCGCC-G-GUGGCCUa -5'
24601 5' -59.4 NC_005264.1 + 34637 0.72 0.379716
Target:  5'- --cGggGUGUU-CGCGGCCACCGGu- -3'
miRNA:   3'- aauCuuCGCAGcGCGCCGGUGGCCua -5'
24601 5' -59.4 NC_005264.1 + 157215 0.72 0.42192
Target:  5'- -gGGAcaccuAGCGUCGCGCGGCCcgauagcggcuCCGGu- -3'
miRNA:   3'- aaUCU-----UCGCAGCGCGCCGGu----------GGCCua -5'
24601 5' -59.4 NC_005264.1 + 38188 0.72 0.42192
Target:  5'- -gGGAcaccuAGCGUCGCGCGGCCcgauagcggcuCCGGu- -3'
miRNA:   3'- aaUCU-----UCGCAGCGCGCCGGu----------GGCCua -5'
24601 5' -59.4 NC_005264.1 + 56231 0.71 0.466824
Target:  5'- cUGGcGAGCGUCGCGCGGCUuuugucgagguGgCGGGc -3'
miRNA:   3'- aAUC-UUCGCAGCGCGCCGG-----------UgGCCUa -5'
24601 5' -59.4 NC_005264.1 + 125901 0.7 0.494921
Target:  5'- -cGGAAGCGUaagaacCGCGGcCCGCUGGAg -3'
miRNA:   3'- aaUCUUCGCAgc----GCGCC-GGUGGCCUa -5'
24601 5' -59.4 NC_005264.1 + 84153 0.7 0.494921
Target:  5'- -gGGAAGUgGUCGCaGCGcGCgCGCCGGAc -3'
miRNA:   3'- aaUCUUCG-CAGCG-CGC-CG-GUGGCCUa -5'
24601 5' -59.4 NC_005264.1 + 156604 0.69 0.552231
Target:  5'- -cGGAGGCGgcaagucUCGCgGCGGCCGCggCGGGg -3'
miRNA:   3'- aaUCUUCGC-------AGCG-CGCCGGUG--GCCUa -5'
24601 5' -59.4 NC_005264.1 + 37577 0.69 0.552231
Target:  5'- -cGGAGGCGgcaagucUCGCgGCGGCCGCggCGGGg -3'
miRNA:   3'- aaUCUUCGC-------AGCG-CGCCGGUG--GCCUa -5'
24601 5' -59.4 NC_005264.1 + 29611 0.69 0.553222
Target:  5'- --cGAAGCGUaGCGCGGCggcgCACgGGGUa -3'
miRNA:   3'- aauCUUCGCAgCGCGCCG----GUGgCCUA- -5'
24601 5' -59.4 NC_005264.1 + 19417 0.69 0.572136
Target:  5'- -gGGAGGCGagGCGCcggguguGGCCGCgGGGc -3'
miRNA:   3'- aaUCUUCGCagCGCG-------CCGGUGgCCUa -5'
24601 5' -59.4 NC_005264.1 + 54405 0.69 0.583158
Target:  5'- -aAGAAGUcguuGUUGCGCGGCgCGCCGa-- -3'
miRNA:   3'- aaUCUUCG----CAGCGCGCCG-GUGGCcua -5'
24601 5' -59.4 NC_005264.1 + 119934 0.69 0.593214
Target:  5'- -----cGUGUCGCG-GGCCGCUGGGg -3'
miRNA:   3'- aaucuuCGCAGCGCgCCGGUGGCCUa -5'
24601 5' -59.4 NC_005264.1 + 908 0.69 0.593214
Target:  5'- -----cGUGUCGCG-GGCCGCUGGGg -3'
miRNA:   3'- aaucuuCGCAGCGCgCCGGUGGCCUa -5'
24601 5' -59.4 NC_005264.1 + 131603 0.68 0.613402
Target:  5'- -aGGGAGCGgcgCGCGUGGgCgCGCgCGGAg -3'
miRNA:   3'- aaUCUUCGCa--GCGCGCC-G-GUG-GCCUa -5'
24601 5' -59.4 NC_005264.1 + 109634 0.68 0.633646
Target:  5'- -gGGggGCG-CGacgguugcaacuCGCGGCC-CCGGAg -3'
miRNA:   3'- aaUCuuCGCaGC------------GCGCCGGuGGCCUa -5'
24601 5' -59.4 NC_005264.1 + 134804 0.68 0.64377
Target:  5'- ----cGGCGUCGCGCG--CGCCGGAa -3'
miRNA:   3'- aaucuUCGCAGCGCGCcgGUGGCCUa -5'
24601 5' -59.4 NC_005264.1 + 43681 0.67 0.663983
Target:  5'- ----cGGCGUUaagGCGGCCGCCGGGg -3'
miRNA:   3'- aaucuUCGCAGcg-CGCCGGUGGCCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.