miRNA display CGI


Results 1 - 20 of 45 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24601 5' -59.4 NC_005264.1 + 908 0.69 0.593214
Target:  5'- -----cGUGUCGCG-GGCCGCUGGGg -3'
miRNA:   3'- aaucuuCGCAGCGCgCCGGUGGCCUa -5'
24601 5' -59.4 NC_005264.1 + 1198 0.67 0.663983
Target:  5'- -cGGAccgGGCGUC-CGCGGCCAUggcugCGGGg -3'
miRNA:   3'- aaUCU---UCGCAGcGCGCCGGUG-----GCCUa -5'
24601 5' -59.4 NC_005264.1 + 5060 0.66 0.723745
Target:  5'- cUGGcAGGgGUCGCaagGCGGCCAgcccguCCGGGg -3'
miRNA:   3'- aAUC-UUCgCAGCG---CGCCGGU------GGCCUa -5'
24601 5' -59.4 NC_005264.1 + 5340 0.66 0.76216
Target:  5'- --cGAAGCgGUCGCucgucccggGCGGCCuCgCGGAUg -3'
miRNA:   3'- aauCUUCG-CAGCG---------CGCCGGuG-GCCUA- -5'
24601 5' -59.4 NC_005264.1 + 6208 0.67 0.674056
Target:  5'- -gAGAcGCGUccuuugacccccCGcCGCGGCCGCCGcGAg -3'
miRNA:   3'- aaUCUuCGCA------------GC-GCGCCGGUGGC-CUa -5'
24601 5' -59.4 NC_005264.1 + 8703 0.66 0.743143
Target:  5'- -aAGAAcucgcucugcGCG-CGCGUGGCCGCCGu-- -3'
miRNA:   3'- aaUCUU----------CGCaGCGCGCCGGUGGCcua -5'
24601 5' -59.4 NC_005264.1 + 17137 0.67 0.694092
Target:  5'- -cGGuacGGCGUCgagggGCGCGGCUACaGGAUa -3'
miRNA:   3'- aaUCu--UCGCAG-----CGCGCCGGUGgCCUA- -5'
24601 5' -59.4 NC_005264.1 + 18582 0.67 0.713926
Target:  5'- -gAGAacucGGUGUCgGUGCGGUagcaGCCGGAg -3'
miRNA:   3'- aaUCU----UCGCAG-CGCGCCGg---UGGCCUa -5'
24601 5' -59.4 NC_005264.1 + 19417 0.69 0.572136
Target:  5'- -gGGAGGCGagGCGCcggguguGGCCGCgGGGc -3'
miRNA:   3'- aaUCUUCGCagCGCG-------CCGGUGgCCUa -5'
24601 5' -59.4 NC_005264.1 + 19524 0.66 0.743143
Target:  5'- -gAGAAGC-UCGgGaCGGCCGCCGc-- -3'
miRNA:   3'- aaUCUUCGcAGCgC-GCCGGUGGCcua -5'
24601 5' -59.4 NC_005264.1 + 28025 0.67 0.709979
Target:  5'- -cGGggGCGggaggucuuccggCGCGCGcGaCGCCGGGUa -3'
miRNA:   3'- aaUCuuCGCa------------GCGCGC-CgGUGGCCUA- -5'
24601 5' -59.4 NC_005264.1 + 29611 0.69 0.553222
Target:  5'- --cGAAGCGUaGCGCGGCggcgCACgGGGUa -3'
miRNA:   3'- aauCUUCGCAgCGCGCCG----GUGgCCUA- -5'
24601 5' -59.4 NC_005264.1 + 30518 0.67 0.684095
Target:  5'- -gGGAAGCGgcucUCGCGCaguuuGGCCgACCGcGGUg -3'
miRNA:   3'- aaUCUUCGC----AGCGCG-----CCGG-UGGC-CUA- -5'
24601 5' -59.4 NC_005264.1 + 34637 0.72 0.379716
Target:  5'- --cGggGUGUU-CGCGGCCACCGGu- -3'
miRNA:   3'- aauCuuCGCAGcGCGCCGGUGGCCua -5'
24601 5' -59.4 NC_005264.1 + 37577 0.69 0.552231
Target:  5'- -cGGAGGCGgcaagucUCGCgGCGGCCGCggCGGGg -3'
miRNA:   3'- aaUCUUCGC-------AGCG-CGCCGGUG--GCCUa -5'
24601 5' -59.4 NC_005264.1 + 38188 0.72 0.42192
Target:  5'- -gGGAcaccuAGCGUCGCGCGGCCcgauagcggcuCCGGu- -3'
miRNA:   3'- aaUCU-----UCGCAGCGCGCCGGu----------GGCCua -5'
24601 5' -59.4 NC_005264.1 + 39180 0.66 0.765912
Target:  5'- cUGGgcGCGcgacucuaccgcgcaUCGCuucagagucuGCGGCUGCCGGAUa -3'
miRNA:   3'- aAUCuuCGC---------------AGCG----------CGCCGGUGGCCUA- -5'
24601 5' -59.4 NC_005264.1 + 43681 0.67 0.663983
Target:  5'- ----cGGCGUUaagGCGGCCGCCGGGg -3'
miRNA:   3'- aaucuUCGCAGcg-CGCCGGUGGCCUa -5'
24601 5' -59.4 NC_005264.1 + 48393 0.76 0.240733
Target:  5'- --uGggGCGUCGgGCGGCgGCCaGGAg -3'
miRNA:   3'- aauCuuCGCAGCgCGCCGgUGG-CCUa -5'
24601 5' -59.4 NC_005264.1 + 54362 1.02 0.003552
Target:  5'- cUUAGAAGCGUCGCGCGGCCACCGGAUc -3'
miRNA:   3'- -AAUCUUCGCAGCGCGCCGGUGGCCUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.