miRNA display CGI


Results 61 - 80 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24612 3' -61.6 NC_005264.1 + 141734 0.66 0.684739
Target:  5'- cGAAccccCCUGGCauaacuacgcuccaCGAuGCCGACGCCGCg -3'
miRNA:   3'- cCUUc---GGGCCG--------------GUUcCGGCUGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 55177 0.66 0.677984
Target:  5'- -uGGGCgCGGCUgAAGG-CGGCGaCCGCg -3'
miRNA:   3'- ccUUCGgGCCGG-UUCCgGCUGC-GGCG- -5'
24612 3' -61.6 NC_005264.1 + 146951 0.66 0.677984
Target:  5'- aGAGGCUgGauggcGCUGAGGCCGcAgGCUGCg -3'
miRNA:   3'- cCUUCGGgC-----CGGUUCCGGC-UgCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 98451 0.66 0.677984
Target:  5'- uGGAGCUCGGCgGGauuugucaacccGGCCGGCaCgCGCg -3'
miRNA:   3'- cCUUCGGGCCGgUU------------CCGGCUGcG-GCG- -5'
24612 3' -61.6 NC_005264.1 + 154868 0.66 0.677984
Target:  5'- cGGaAAGCaaCGGaCCucuAGGCagcgacaaaGACGCCGCg -3'
miRNA:   3'- -CC-UUCGg-GCC-GGu--UCCGg--------CUGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 134980 0.66 0.677984
Target:  5'- -aAGGCggCGGCgCAuuGGGCgGAUGCCGCc -3'
miRNA:   3'- ccUUCGg-GCCG-GU--UCCGgCUGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 156441 0.66 0.677984
Target:  5'- aGGAGUUCGGCau-GGCCGugGagcaGCa -3'
miRNA:   3'- cCUUCGGGCCGguuCCGGCugCgg--CG- -5'
24612 3' -61.6 NC_005264.1 + 159843 0.66 0.677984
Target:  5'- -cGAGCcgCCGGCCca-GUCGGCGCuCGCa -3'
miRNA:   3'- ccUUCG--GGCCGGuucCGGCUGCG-GCG- -5'
24612 3' -61.6 NC_005264.1 + 37414 0.66 0.677984
Target:  5'- aGGAGUUCGGCau-GGCCGugGagcaGCa -3'
miRNA:   3'- cCUUCGGGCCGguuCCGGCugCgg--CG- -5'
24612 3' -61.6 NC_005264.1 + 107663 0.66 0.677984
Target:  5'- cGGucGCcgccuucagCCGcGCCcaGAGGCCGcauACGCUGCg -3'
miRNA:   3'- -CCuuCG---------GGC-CGG--UUCCGGC---UGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 102236 0.67 0.668306
Target:  5'- cGGcuGCCgCGGCauacgagaaGGGGCuCGAgaaCGCCGCc -3'
miRNA:   3'- -CCuuCGG-GCCGg--------UUCCG-GCU---GCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 148494 0.67 0.668306
Target:  5'- gGGAcGCgCUGGUCGcguuGGCgGcgaGCGCCGCg -3'
miRNA:   3'- -CCUuCG-GGCCGGUu---CCGgC---UGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 146825 0.67 0.668306
Target:  5'- cGGAGGCgCGGC---GGUCGuCGCCuGCc -3'
miRNA:   3'- -CCUUCGgGCCGguuCCGGCuGCGG-CG- -5'
24612 3' -61.6 NC_005264.1 + 75092 0.67 0.668306
Target:  5'- cGgcGCUgCGG-CAGGcGCCGGCGCCGa -3'
miRNA:   3'- cCuuCGG-GCCgGUUC-CGGCUGCGGCg -5'
24612 3' -61.6 NC_005264.1 + 50972 0.67 0.668306
Target:  5'- gGGAAGCCCGaacuCgAAGGCCuuaagcACGuuGCc -3'
miRNA:   3'- -CCUUCGGGCc---GgUUCCGGc-----UGCggCG- -5'
24612 3' -61.6 NC_005264.1 + 17813 0.67 0.668306
Target:  5'- cGGuAGGCCCuGGCCAcGGCaaauuuaGCGCCa- -3'
miRNA:   3'- -CC-UUCGGG-CCGGUuCCGgc-----UGCGGcg -5'
24612 3' -61.6 NC_005264.1 + 14862 0.67 0.668306
Target:  5'- aGAGGCuuG-CCAGGGCCauguacacuaGACGCgCGUc -3'
miRNA:   3'- cCUUCGggCcGGUUCCGG----------CUGCG-GCG- -5'
24612 3' -61.6 NC_005264.1 + 87697 0.67 0.659573
Target:  5'- uGGcguGGCCCucguggauGCCGAGGCCuugguggcuuucauCGCCGCa -3'
miRNA:   3'- -CCu--UCGGGc-------CGGUUCCGGcu------------GCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 84192 0.67 0.658601
Target:  5'- uGGGA-CgaGGCaCAGGGCCGcCGCgGCg -3'
miRNA:   3'- -CCUUcGggCCG-GUUCCGGCuGCGgCG- -5'
24612 3' -61.6 NC_005264.1 + 43894 0.67 0.658601
Target:  5'- aGGggGCgCCGGagaCGAuagcgcGGCCGuCGCCu- -3'
miRNA:   3'- -CCuuCG-GGCCg--GUU------CCGGCuGCGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.