miRNA display CGI


Results 41 - 60 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24612 3' -61.6 NC_005264.1 + 87747 0.66 0.69723
Target:  5'- cGgcGCCgGcGCCu--GCCGcaGCGCCGCg -3'
miRNA:   3'- cCuuCGGgC-CGGuucCGGC--UGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 129522 0.66 0.696272
Target:  5'- cGGAGGCgacggaaccacugCgGGCguGGGCUuaGGCGUCGCc -3'
miRNA:   3'- -CCUUCG-------------GgCCGguUCCGG--CUGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 8782 0.66 0.696272
Target:  5'- cGGcGGGCgUCGGCCAGgacGGCCaGcgcuccucuucgaGCGCCGCu -3'
miRNA:   3'- -CC-UUCG-GGCCGGUU---CCGG-C-------------UGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 43461 0.66 0.696272
Target:  5'- gGGAAGUCgGGCaacGGuuGGCgguugucgccauuGCCGCg -3'
miRNA:   3'- -CCUUCGGgCCGguuCCggCUG-------------CGGCG- -5'
24612 3' -61.6 NC_005264.1 + 127808 0.66 0.696272
Target:  5'- cGGcGGGCgUCGGCCAGgacGGCCaGcgcuccucuucgaGCGCCGCu -3'
miRNA:   3'- -CC-UUCG-GGCCGGUU---CCGG-C-------------UGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 162488 0.66 0.696272
Target:  5'- gGGAAGUCgGGCaacGGuuGGCgguugucgccauuGCCGCg -3'
miRNA:   3'- -CCUUCGGgCCGguuCCggCUG-------------CGGCG- -5'
24612 3' -61.6 NC_005264.1 + 121886 0.66 0.694354
Target:  5'- cGucGCCCGcugcggcugcgaucGaCCGGGGCgCGGCGCgGCg -3'
miRNA:   3'- cCuuCGGGC--------------C-GGUUCCG-GCUGCGgCG- -5'
24612 3' -61.6 NC_005264.1 + 2860 0.66 0.694354
Target:  5'- cGucGCCCGcugcggcugcgaucGaCCGGGGCgCGGCGCgGCg -3'
miRNA:   3'- cCuuCGGGC--------------C-GGUUCCG-GCUGCGgCG- -5'
24612 3' -61.6 NC_005264.1 + 138348 0.66 0.691474
Target:  5'- uGGAAG-UCGGCCGccaaauAGGCCcucacgaguuaucCGCCGCg -3'
miRNA:   3'- -CCUUCgGGCCGGU------UCCGGcu-----------GCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 99100 0.66 0.691474
Target:  5'- -aGGGCCCGGa--GGGCCGACGagaaacucuuggcguUCGCc -3'
miRNA:   3'- ccUUCGGGCCgguUCCGGCUGC---------------GGCG- -5'
24612 3' -61.6 NC_005264.1 + 137212 0.66 0.687628
Target:  5'- cGGAGCgCGGCCcca-CCGcCGCCGUg -3'
miRNA:   3'- cCUUCGgGCCGGuuccGGCuGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 61438 0.66 0.687628
Target:  5'- cGGcGGCCCGcuccucggcGCCGAGuuGCuCGAgCGCCGUu -3'
miRNA:   3'- -CCuUCGGGC---------CGGUUC--CG-GCU-GCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 92024 0.66 0.687628
Target:  5'- uGGAAcGCCCGcgaaagaaauGUgGAGGUCGGuggGCCGCg -3'
miRNA:   3'- -CCUU-CGGGC----------CGgUUCCGGCUg--CGGCG- -5'
24612 3' -61.6 NC_005264.1 + 103542 0.66 0.687628
Target:  5'- cGGAuaUgCGGCgGAacGGCaGACGCCGCa -3'
miRNA:   3'- -CCUucGgGCCGgUU--CCGgCUGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 33941 0.66 0.687628
Target:  5'- -uGAGCCCGccgucGUCGAGGaCGAgcggUGCCGCa -3'
miRNA:   3'- ccUUCGGGC-----CGGUUCCgGCU----GCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 133257 0.66 0.687628
Target:  5'- uGGAGCCgcaGGCaaacAGGCCGA-GCgGCa -3'
miRNA:   3'- cCUUCGGg--CCGgu--UCCGGCUgCGgCG- -5'
24612 3' -61.6 NC_005264.1 + 130297 0.66 0.687628
Target:  5'- cGGcAGCCacauccacaGCCAGGGCCGAggauggGUCGCa -3'
miRNA:   3'- -CCuUCGGgc-------CGGUUCCGGCUg-----CGGCG- -5'
24612 3' -61.6 NC_005264.1 + 75052 0.66 0.687628
Target:  5'- cGAAGCCCgggucGGCgGAGuaGCUGACGCgGa -3'
miRNA:   3'- cCUUCGGG-----CCGgUUC--CGGCUGCGgCg -5'
24612 3' -61.6 NC_005264.1 + 103123 0.66 0.687628
Target:  5'- ---cGUCCGGCgCGGuagccGCCGGCGCgGCg -3'
miRNA:   3'- ccuuCGGGCCG-GUUc----CGGCUGCGgCG- -5'
24612 3' -61.6 NC_005264.1 + 12644 0.66 0.686665
Target:  5'- cGAGGCCgccaaugUGGCUAuuaAGGCCGGC-CgGCa -3'
miRNA:   3'- cCUUCGG-------GCCGGU---UCCGGCUGcGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.