miRNA display CGI


Results 21 - 40 of 289 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24612 3' -61.6 NC_005264.1 + 45386 0.66 0.716279
Target:  5'- aGGAgaaGGCgCGGCaaacgaugGAGGgCGGCGCCcuGCg -3'
miRNA:   3'- -CCU---UCGgGCCGg-------UUCCgGCUGCGG--CG- -5'
24612 3' -61.6 NC_005264.1 + 134846 0.66 0.716279
Target:  5'- uGGAucgaugGGCCgCGGCUAcGGCgGuCGUCGUc -3'
miRNA:   3'- -CCU------UCGG-GCCGGUuCCGgCuGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 72251 0.66 0.716279
Target:  5'- ----aCCgCGGgCAAGGCgCGACcuGCCGCg -3'
miRNA:   3'- ccuucGG-GCCgGUUCCG-GCUG--CGGCG- -5'
24612 3' -61.6 NC_005264.1 + 16416 0.66 0.715332
Target:  5'- gGGAGGCaagGGCCGcucgacugccgcgGGGCCuGC-CCGCg -3'
miRNA:   3'- -CCUUCGgg-CCGGU-------------UCCGGcUGcGGCG- -5'
24612 3' -61.6 NC_005264.1 + 158564 0.66 0.715332
Target:  5'- --uGGCCa-GCCAugcAGGCCGAacagacuCGCUGCg -3'
miRNA:   3'- ccuUCGGgcCGGU---UCCGGCU-------GCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 62247 0.66 0.715332
Target:  5'- gGGAAGCC--GCCAcAGGCuguacaaCGACGgCGCu -3'
miRNA:   3'- -CCUUCGGgcCGGU-UCCG-------GCUGCgGCG- -5'
24612 3' -61.6 NC_005264.1 + 2995 0.66 0.709638
Target:  5'- aGGAGGaCCGGCCGgcgcuaaucauccAGcGCCccccgcaguuugcaGCGCCGCu -3'
miRNA:   3'- -CCUUCgGGCCGGU-------------UC-CGGc-------------UGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 122022 0.66 0.709638
Target:  5'- aGGAGGaCCGGCCGgcgcuaaucauccAGcGCCccccgcaguuugcaGCGCCGCu -3'
miRNA:   3'- -CCUUCgGGCCGGU-------------UC-CGGc-------------UGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 158520 0.66 0.706783
Target:  5'- gGGcAGGCCUGcGCUguGGUgGACGCCa- -3'
miRNA:   3'- -CC-UUCGGGC-CGGuuCCGgCUGCGGcg -5'
24612 3' -61.6 NC_005264.1 + 25475 0.66 0.706783
Target:  5'- uGGggGCgCCaGGCguacgggaaCGAGGCUagGAUGgCCGCg -3'
miRNA:   3'- -CCuuCG-GG-CCG---------GUUCCGG--CUGC-GGCG- -5'
24612 3' -61.6 NC_005264.1 + 124508 0.66 0.706783
Target:  5'- --cAGCaucaCGGCCAGGGCC--CGCCa- -3'
miRNA:   3'- ccuUCGg---GCCGGUUCCGGcuGCGGcg -5'
24612 3' -61.6 NC_005264.1 + 39493 0.66 0.706783
Target:  5'- gGGcAGGCCUGcGCUguGGUgGACGCCa- -3'
miRNA:   3'- -CC-UUCGGGC-CGGuuCCGgCUGCGGcg -5'
24612 3' -61.6 NC_005264.1 + 53043 0.66 0.706783
Target:  5'- uGGAaauGGcCCCGGCCGAGuCUG-CGUCGg -3'
miRNA:   3'- -CCU---UC-GGGCCGGUUCcGGCuGCGGCg -5'
24612 3' -61.6 NC_005264.1 + 5481 0.66 0.706783
Target:  5'- --cAGCaucaCGGCCAGGGCC--CGCCa- -3'
miRNA:   3'- ccuUCGg---GCCGGUUCCGGcuGCGGcg -5'
24612 3' -61.6 NC_005264.1 + 76228 0.66 0.706783
Target:  5'- cGAAGaaaGGCUgucgcGAGGCgCGACGaCCGCg -3'
miRNA:   3'- cCUUCgggCCGG-----UUCCG-GCUGC-GGCG- -5'
24612 3' -61.6 NC_005264.1 + 48192 0.66 0.705831
Target:  5'- uGGAGacGCUaCGGCCGucuGGCaccguggUGACGCUGCu -3'
miRNA:   3'- -CCUU--CGG-GCCGGUu--CCG-------GCUGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 147735 0.66 0.705831
Target:  5'- aGGuGGGCCUGGCCcAGucGCCGAUauuauaaGCgCGCg -3'
miRNA:   3'- -CC-UUCGGGCCGGuUC--CGGCUG-------CG-GCG- -5'
24612 3' -61.6 NC_005264.1 + 109537 0.66 0.69723
Target:  5'- aGGggGCCaaaaGCuCAuccuGGCaaccaaacugCGGCGCCGCg -3'
miRNA:   3'- -CCuuCGGgc--CG-GUu---CCG----------GCUGCGGCG- -5'
24612 3' -61.6 NC_005264.1 + 136723 0.66 0.69723
Target:  5'- --cGGCCCGcGCCAcGaGCCG-CGCgGUg -3'
miRNA:   3'- ccuUCGGGC-CGGUuC-CGGCuGCGgCG- -5'
24612 3' -61.6 NC_005264.1 + 120760 0.66 0.69723
Target:  5'- gGGAuauCCCGGCgCA--GCUGACGCCacGCg -3'
miRNA:   3'- -CCUuc-GGGCCG-GUucCGGCUGCGG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.